RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 UVSSAQ2YD98 709 aa27.19■■□□□ 1.94
VPS53-211ENST00000571805 USPL1Q5W0Q7 1092 aa27.19■■□□□ 1.94
VPS53-211ENST00000571805 TMEM94Q12767 1356 aa27.19■■□□□ 1.94
VPS53-211ENST00000571805 HMG20BQ9P0W2 317 aa27.19■■□□□ 1.94
VPS53-211ENST00000571805 ATP5J2-PTCD1G3V325 749 aa27.18■■□□□ 1.94
VPS53-211ENST00000571805 PTCD1O75127 700 aaKnown RBP27.18■■□□□ 1.94
VPS53-211ENST00000571805 ANKRD1Q15327 319 aa27.18■■□□□ 1.94
VPS53-211ENST00000571805 CSPP1Q1MSJ5 1256 aa27.18■■□□□ 1.94
VPS53-211ENST00000571805 VPS37CA5D8V6 355 aaPredicted RBP27.17■■□□□ 1.94
VPS53-211ENST00000571805 TOB2Q14106 344 aaPredicted RBP27.17■■□□□ 1.94
VPS53-211ENST00000571805 A0A087WZG4 1122 aa27.17■■□□□ 1.94
VPS53-211ENST00000571805 TCEANC2Q96MN5 208 aa27.17■■□□□ 1.94
VPS53-211ENST00000571805 CABP4P57796 275 aa27.16■■□□□ 1.94
VPS53-211ENST00000571805 LARP1BQ659C4 914 aaKnown RBP27.16■■□□□ 1.94
VPS53-211ENST00000571805 PLBD2Q8NHP8 589 aa27.16■■□□□ 1.94
VPS53-211ENST00000571805 DCCP43146 1447 aa27.16■■□□□ 1.94
VPS53-211ENST00000571805 PDIA4P13667 645 aaKnown RBP27.16■■□□□ 1.94
VPS53-211ENST00000571805 TPRNQ4KMQ1 711 aa27.16■■□□□ 1.94
VPS53-211ENST00000571805 TNS3Q68CZ2 1445 aa27.16■■□□□ 1.94
VPS53-211ENST00000571805 LAMB4A4D0S4 1761 aa27.16■■□□□ 1.94
VPS53-211ENST00000571805 STRCP1A6NGW2 1772 aa27.16■■□□□ 1.94
VPS53-211ENST00000571805 PDZRN4Q6ZMN7 1036 aaPredicted RBP27.15■■□□□ 1.94
VPS53-211ENST00000571805 KLHL34Q8N239 644 aa27.15■■□□□ 1.94
VPS53-211ENST00000571805 RFX7Q2KHR2 1363 aa27.15■■□□□ 1.94
VPS53-211ENST00000571805 DBNDD2Q9BQY9 259 aa27.14■■□□□ 1.94
VPS53-211ENST00000571805 FUCA2Q9BTY2 467 aa27.14■■□□□ 1.94
VPS53-211ENST00000571805 NDUFB9Q9Y6M9 179 aa27.14■■□□□ 1.93
VPS53-211ENST00000571805 TPM2P07951 284 aa27.13■■□□□ 1.93
VPS53-211ENST00000571805 HAUS7Q99871 368 aa27.13■■□□□ 1.93
VPS53-211ENST00000571805 ZNF609O15014 1411 aa27.12■■□□□ 1.93
VPS53-211ENST00000571805 CDC37L1Q7L3B6 337 aa27.12■■□□□ 1.93
VPS53-211ENST00000571805 PARP4Q9UKK3 1724 aaKnown RBP27.12■■□□□ 1.93
VPS53-211ENST00000571805 NBPF26B4DH59 902 aa27.12■■□□□ 1.93
VPS53-211ENST00000571805 HCLS1P14317 486 aaPredicted RBP27.12■■□□□ 1.93
VPS53-211ENST00000571805 PDCP20941 246 aa27.12■■□□□ 1.93
VPS53-211ENST00000571805 NBPF14Q5TI25 921 aa27.12■■□□□ 1.93
VPS53-211ENST00000571805 NBPF10Q6P3W6 841 aaKnown RBP27.12■■□□□ 1.93
VPS53-211ENST00000571805 NBPF15Q8N660 670 aa27.12■■□□□ 1.93
VPS53-211ENST00000571805 CPDO75976 1380 aa27.12■■□□□ 1.93
VPS53-211ENST00000571805 CHGBP05060 677 aa27.11■■□□□ 1.93
VPS53-211ENST00000571805 FOXO4P98177 505 aa27.11■■□□□ 1.93
VPS53-211ENST00000571805 LMBR1LQ6UX01 489 aa27.11■■□□□ 1.93
VPS53-211ENST00000571805 H7C1W4 665 aa27.11■■□□□ 1.93
VPS53-211ENST00000571805 KRT32Q14532 448 aa27.11■■□□□ 1.93
VPS53-211ENST00000571805 SPATA31A3Q5VYP0 1347 aa27.11■■□□□ 1.93
VPS53-211ENST00000571805 GIMAP6Q6P9H5 292 aa27.09■■□□□ 1.93
VPS53-211ENST00000571805 TTC6Q86TZ1 520 aa27.09■■□□□ 1.93
VPS53-211ENST00000571805 DNAJC2Q99543 621 aaKnown RBP27.09■■□□□ 1.93
VPS53-211ENST00000571805 SEC62Q99442 399 aaKnown RBP27.09■■□□□ 1.93
VPS53-211ENST00000571805 TERF1P54274 439 aa27.08■■□□□ 1.93
VPS53-211ENST00000571805 CCDC129Q6ZRS4 1044 aa27.08■■□□□ 1.93
VPS53-211ENST00000571805 FERMT3Q86UX7 667 aa27.08■■□□□ 1.93
VPS53-211ENST00000571805 USP25Q9UHP3 1055 aa27.08■■□□□ 1.93
VPS53-211ENST00000571805 KRT85P78386 507 aa27.08■■□□□ 1.93
VPS53-211ENST00000571805 MCMDC2Q4G0Z9 681 aa27.08■■□□□ 1.93
VPS53-211ENST00000571805 U3KPZ7 1027 aaPredicted RBP27.08■■□□□ 1.93
VPS53-211ENST00000571805 ELP1O95163 1332 aa27.07■■□□□ 1.92
VPS53-211ENST00000571805 NEK1Q96PY6 1258 aa27.07■■□□□ 1.92
VPS53-211ENST00000571805 FAM173BQ6P4H8 233 aa27.07■■□□□ 1.92
VPS53-211ENST00000571805 ATG9AQ7Z3C6 839 aa27.07■■□□□ 1.92
VPS53-211ENST00000571805 CADPS2Q86UW7 1296 aa27.07■■□□□ 1.92
VPS53-211ENST00000571805 PTMAP06454 111 aaKnown RBP27.06■■□□□ 1.92
VPS53-211ENST00000571805 STK3Q13188 491 aa27.06■■□□□ 1.92
VPS53-211ENST00000571805 DDX46Q7L014 1031 aaKnown RBP27.06■■□□□ 1.92
VPS53-211ENST00000571805 CYP21A2P08686 494 aa27.06■■□□□ 1.92
VPS53-211ENST00000571805 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP27.06■■□□□ 1.92
VPS53-211ENST00000571805 NUP188Q5SRE5 1749 aa27.05■■□□□ 1.92
VPS53-211ENST00000571805 TTLL7Q6ZT98 887 aa27.05■■□□□ 1.92
VPS53-211ENST00000571805 KBTBD3Q8NAB2 608 aa27.05■■□□□ 1.92
VPS53-211ENST00000571805 GTF3C6Q969F1 213 aa27.05■■□□□ 1.92
VPS53-211ENST00000571805 ADCY5O95622 1261 aa27.04■■□□□ 1.92
VPS53-211ENST00000571805 UBR2Q8IWV8 1755 aa27.04■■□□□ 1.92
VPS53-211ENST00000571805 TJP1Q07157 1748 aa27.04■■□□□ 1.92
VPS53-211ENST00000571805 KDM4AO75164 1064 aa27.04■■□□□ 1.92
VPS53-211ENST00000571805 SH3TC1Q8TE82 1336 aa27.03■■□□□ 1.92
VPS53-211ENST00000571805 CWC25Q9NXE8 425 aaPredicted RBP27.03■■□□□ 1.92
VPS53-211ENST00000571805 Q6ZUG5 572 aa27.02■■□□□ 1.92
VPS53-211ENST00000571805 GPR108Q9NPR9 543 aa27.02■■□□□ 1.92
VPS53-211ENST00000571805 PALLDQ8WX93 1383 aa27.02■■□□□ 1.92
VPS53-211ENST00000571805 CHMP3Q9Y3E7 222 aa27.02■■□□□ 1.92
VPS53-211ENST00000571805 R3HCC1Q9Y3T6 440 aaKnown RBP27.02■■□□□ 1.92
VPS53-211ENST00000571805 ZCRB1Q8TBF4 217 aaKnown RBP27.01■■□□□ 1.91
VPS53-211ENST00000571805 DNAJC5Q9H3Z4 198 aa27.01■■□□□ 1.91
VPS53-211ENST00000571805 PCDH11XQ9BZA7 1347 aa27.01■■□□□ 1.91
VPS53-211ENST00000571805 PCDH11YQ9BZA8 1340 aa27.01■■□□□ 1.91
VPS53-211ENST00000571805 JAK2O60674 1132 aa27■■□□□ 1.91
VPS53-211ENST00000571805 A1BGP04217 495 aa27■■□□□ 1.91
VPS53-211ENST00000571805 LIG1P18858 919 aa27■■□□□ 1.91
VPS53-211ENST00000571805 SCAND2PQ9GZW5 306 aaPredicted RBP27■■□□□ 1.91
VPS53-211ENST00000571805 ERVV-2B6SEH9 535 aa27■■□□□ 1.91
VPS53-211ENST00000571805 STOX1Q6ZVD7 989 aa27■■□□□ 1.91
VPS53-211ENST00000571805 NEUROD6Q96NK8 337 aa27■■□□□ 1.91
VPS53-211ENST00000571805 KCPQ6ZWJ8 1503 aa27■■□□□ 1.91
VPS53-211ENST00000571805 TIMM10P62072 90 aa26.99■■□□□ 1.91
VPS53-211ENST00000571805 PAG1Q9NWQ8 432 aa26.99■■□□□ 1.91
VPS53-211ENST00000571805 CCDC9Q9Y3X0 531 aaKnown RBP26.99■■□□□ 1.91
VPS53-211ENST00000571805 WDR17Q8IZU2 1322 aa26.99■■□□□ 1.91
VPS53-211ENST00000571805 LAMA4Q16363 1823 aa26.99■■□□□ 1.91
VPS53-211ENST00000571805 IL15P40933 162 aaPredicted RBP26.99■■□□□ 1.91
VPS53-211ENST00000571805 HELLSQ9NRZ9 838 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms