RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 SLIT2O94813 1529 aa21.85■■□□□ 1.09
SMPD3-211ENST00000568373 PKP1Q13835 747 aa21.84■■□□□ 1.09
SMPD3-211ENST00000568373 NECTIN1Q15223 517 aa21.84■■□□□ 1.09
SMPD3-211ENST00000568373 NOL8Q76FK4 1167 aaKnown RBP21.84■■□□□ 1.09
SMPD3-211ENST00000568373 MAP4K1Q92918 833 aa21.84■■□□□ 1.09
SMPD3-211ENST00000568373 TTC14Q96N46 770 aa21.84■■□□□ 1.09
SMPD3-211ENST00000568373 IL6STP40189 918 aaPredicted RBP21.84■■□□□ 1.09
SMPD3-211ENST00000568373 PRPF40BQ6NWY9 871 aaKnown RBP21.84■■□□□ 1.09
SMPD3-211ENST00000568373 NLRP10Q86W26 655 aa21.84■■□□□ 1.09
SMPD3-211ENST00000568373 ZNF609O15014 1411 aa21.84■■□□□ 1.09
SMPD3-211ENST00000568373 FBXO3Q9UK99 471 aa21.83■■□□□ 1.09
SMPD3-211ENST00000568373 RBM8AQ9Y5S9 174 aaKnown RBP21.83■■□□□ 1.09
SMPD3-211ENST00000568373 CDHR2Q9BYE9 1310 aa21.83■■□□□ 1.09
SMPD3-211ENST00000568373 BAG4O95429 457 aaKnown RBP21.83■■□□□ 1.08
SMPD3-211ENST00000568373 CSF1RP07333 972 aa21.83■■□□□ 1.08
SMPD3-211ENST00000568373 BARGINQ6ZT62 677 aa21.83■■□□□ 1.08
SMPD3-211ENST00000568373 MARCH10Q8NA82 808 aaPredicted RBP21.83■■□□□ 1.08
SMPD3-211ENST00000568373 NEUROD6Q96NK8 337 aa21.83■■□□□ 1.08
SMPD3-211ENST00000568373 DNAJC2Q99543 621 aaKnown RBP21.83■■□□□ 1.08
SMPD3-211ENST00000568373 GPTP24298 496 aa21.82■■□□□ 1.08
SMPD3-211ENST00000568373 PUS3Q9BZE2 481 aaKnown RBP21.82■■□□□ 1.08
SMPD3-211ENST00000568373 TM6SF1Q9BZW5 370 aa21.82■■□□□ 1.08
SMPD3-211ENST00000568373 NUP98P52948 1817 aa21.82■■□□□ 1.08
SMPD3-211ENST00000568373 ERVV-1B6SEH8 477 aa21.81■■□□□ 1.08
SMPD3-211ENST00000568373 GOLGA6L22H0YM25 854 aa21.81■■□□□ 1.08
SMPD3-211ENST00000568373 CASTP20810 708 aaKnown RBP21.81■■□□□ 1.08
SMPD3-211ENST00000568373 TIMM10P62072 90 aa21.81■■□□□ 1.08
SMPD3-211ENST00000568373 ZKSCAN1P17029 563 aaPredicted RBP21.81■■□□□ 1.08
SMPD3-211ENST00000568373 CCDC9Q9Y3X0 531 aaKnown RBP21.81■■□□□ 1.08
SMPD3-211ENST00000568373 NDUFB9Q9Y6M9 179 aa21.81■■□□□ 1.08
SMPD3-211ENST00000568373 KCNJ4P48050 445 aa21.8■■□□□ 1.08
SMPD3-211ENST00000568373 CREB3L3Q68CJ9 461 aa21.8■■□□□ 1.08
SMPD3-211ENST00000568373 DZIP3Q86Y13 1208 aaKnown RBP21.8■■□□□ 1.08
SMPD3-211ENST00000568373 A0A1B0GUL7 405 aa21.79■■□□□ 1.08
SMPD3-211ENST00000568373 AK2P54819 239 aa21.79■■□□□ 1.08
SMPD3-211ENST00000568373 SKOR2Q2VWA4 1001 aaPredicted RBP21.79■■□□□ 1.08
SMPD3-211ENST00000568373 ZNF589Q86UQ0 364 aaPredicted RBP21.79■■□□□ 1.08
SMPD3-211ENST00000568373 ACSBG1Q96GR2 724 aa21.79■■□□□ 1.08
SMPD3-211ENST00000568373 JAKMIP1Q96N16 626 aaKnown RBP21.79■■□□□ 1.08
SMPD3-211ENST00000568373 C8orf37Q96NL8 207 aa21.79■■□□□ 1.08
SMPD3-211ENST00000568373 CEP126Q9P2H0 1117 aa21.79■■□□□ 1.08
SMPD3-211ENST00000568373 ZDHHC9Q9Y397 364 aa21.79■■□□□ 1.08
SMPD3-211ENST00000568373 IFIT5Q13325 482 aaKnown RBP21.79■■□□□ 1.08
SMPD3-211ENST00000568373 ADCK5Q3MIX3 580 aa21.79■■□□□ 1.08
SMPD3-211ENST00000568373 ZSWIM6Q9HCJ5 1215 aa21.79■■□□□ 1.08
SMPD3-211ENST00000568373 A0A0G2JS52 829 aa21.78■■□□□ 1.08
SMPD3-211ENST00000568373 DDX46Q7L014 1031 aaKnown RBP21.78■■□□□ 1.08
SMPD3-211ENST00000568373 SYNE4Q8N205 404 aa21.78■■□□□ 1.08
SMPD3-211ENST00000568373 KBTBD3Q8NAB2 608 aa21.78■■□□□ 1.08
SMPD3-211ENST00000568373 TBC1D2BQ9UPU7 963 aa21.78■■□□□ 1.08
SMPD3-211ENST00000568373 MYH3P11055 1940 aa21.78■■□□□ 1.08
SMPD3-211ENST00000568373 VPS53Q5VIR6 699 aa21.78■■□□□ 1.08
SMPD3-211ENST00000568373 CCDC85AQ96PX6 553 aaPredicted RBP21.78■■□□□ 1.08
SMPD3-211ENST00000568373 GZF1Q9H116 711 aaPredicted RBP21.78■■□□□ 1.08
SMPD3-211ENST00000568373 LIMCH1Q9UPQ0 1083 aa21.78■■□□□ 1.08
SMPD3-211ENST00000568373 CYP46A1Q9Y6A2 500 aa21.78■■□□□ 1.08
SMPD3-211ENST00000568373 PALLDQ8WX93 1383 aa21.77■■□□□ 1.08
SMPD3-211ENST00000568373 SLC27A2O14975 620 aa21.77■■□□□ 1.08
SMPD3-211ENST00000568373 TAF5LO75529 589 aa21.77■■□□□ 1.08
SMPD3-211ENST00000568373 EIF5P55010 431 aaKnown RBP21.77■■□□□ 1.08
SMPD3-211ENST00000568373 TAF7LQ5H9L4 462 aa21.77■■□□□ 1.08
SMPD3-211ENST00000568373 RNF20Q5VTR2 975 aa21.77■■□□□ 1.08
SMPD3-211ENST00000568373 INTS5Q6P9B9 1019 aaKnown RBP21.77■■□□□ 1.08
SMPD3-211ENST00000568373 RUFY3Q7L099 469 aa21.77■■□□□ 1.08
SMPD3-211ENST00000568373 TICAM2Q86XR7 235 aa21.77■■□□□ 1.08
SMPD3-211ENST00000568373 PAG1Q9NWQ8 432 aa21.77■■□□□ 1.08
SMPD3-211ENST00000568373 RPAP1Q9BWH6 1393 aaPredicted RBP21.77■■□□□ 1.07
SMPD3-211ENST00000568373 CPA1P15085 419 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 ATP6V1AP38606 617 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 TTLL11Q8NHH1 800 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 CCDC87Q9NVE4 849 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 AKAP2Q9Y2D5 859 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 LOC102724428A0A0B4J2F2 783 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 CTSWP56202 376 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 SIK1P57059 783 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 NGLY1Q96IV0 654 aa21.76■■□□□ 1.07
SMPD3-211ENST00000568373 TRMT112Q9UI30 125 aaKnown RBP21.76■■□□□ 1.07
SMPD3-211ENST00000568373 CICQ96RK0 1608 aaPredicted RBP21.76■■□□□ 1.07
SMPD3-211ENST00000568373 IRS4O14654 1257 aaPredicted RBP21.75■■□□□ 1.07
SMPD3-211ENST00000568373 ZNF34Q8IZ26 560 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.75■■□□□ 1.07
SMPD3-211ENST00000568373 PDRG1Q9NUG6 133 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 SPEF2Q9C093 1822 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 RREB1Q92766 1687 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 SPATA31A6Q5VVP1 1343 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 UBN2Q6ZU65 1347 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 GOLIM4O00461 696 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 CRKLP46109 303 aaKnown RBP21.75■■□□□ 1.07
SMPD3-211ENST00000568373 MCMDC2Q4G0Z9 681 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 FBXO41Q8TF61 875 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 HMG20BQ9P0W2 317 aa21.75■■□□□ 1.07
SMPD3-211ENST00000568373 SH3TC1Q8TE82 1336 aa21.74■■□□□ 1.07
SMPD3-211ENST00000568373 BRD1O95696 1058 aa21.74■■□□□ 1.07
SMPD3-211ENST00000568373 IFIT1P09914 478 aaKnown RBP21.74■■□□□ 1.07
SMPD3-211ENST00000568373 PSMA5P28066 241 aa21.74■■□□□ 1.07
SMPD3-211ENST00000568373 USPL1Q5W0Q7 1092 aa21.74■■□□□ 1.07
SMPD3-211ENST00000568373 MCTP1Q6DN14 999 aa21.74■■□□□ 1.07
SMPD3-211ENST00000568373 GREM2Q9H772 168 aa21.74■■□□□ 1.07
SMPD3-211ENST00000568373 ITGA6P23229 1130 aa21.73■■□□□ 1.07
SMPD3-211ENST00000568373 CHGBP05060 677 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms