RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 TAF1P21675 1872 aa23.09■■□□□ 1.29
CLK3-221ENST00000568139 GMPSP49915 693 aaPredicted RBP23.08■■□□□ 1.29
CLK3-221ENST00000568139 CIAPIN1Q6FI81 312 aa23.08■■□□□ 1.29
CLK3-221ENST00000568139 PAXIP1Q6ZW49 1069 aaPredicted RBP23.08■■□□□ 1.29
CLK3-221ENST00000568139 CDHR2Q9BYE9 1310 aa23.08■■□□□ 1.28
CLK3-221ENST00000568139 GRAPQ13588 217 aa23.07■■□□□ 1.28
CLK3-221ENST00000568139 DDX46Q7L014 1031 aaKnown RBP23.07■■□□□ 1.28
CLK3-221ENST00000568139 GRAPLQ8TC17 118 aaPredicted RBP23.07■■□□□ 1.28
CLK3-221ENST00000568139 NECTIN2Q92692 538 aa23.07■■□□□ 1.28
CLK3-221ENST00000568139 ABHD8Q96I13 439 aa23.07■■□□□ 1.28
CLK3-221ENST00000568139 TRMT112Q9UI30 125 aaKnown RBP23.07■■□□□ 1.28
CLK3-221ENST00000568139 SH3TC1Q8TE82 1336 aa23.07■■□□□ 1.28
CLK3-221ENST00000568139 MAP2K2P36507 400 aa23.06■■□□□ 1.28
CLK3-221ENST00000568139 TNIP1Q15025 636 aa23.06■■□□□ 1.28
CLK3-221ENST00000568139 BEGAINQ9BUH8 593 aa23.06■■□□□ 1.28
CLK3-221ENST00000568139 RALBP1Q15311 655 aa23.05■■□□□ 1.28
CLK3-221ENST00000568139 SAPCD2Q86UD0 394 aa23.05■■□□□ 1.28
CLK3-221ENST00000568139 ZC3H15Q8WU90 426 aaKnown RBP23.05■■□□□ 1.28
CLK3-221ENST00000568139 CHL1O00533 1208 aa23.04■■□□□ 1.28
CLK3-221ENST00000568139 RAD17O75943 681 aa23.04■■□□□ 1.28
CLK3-221ENST00000568139 CELF2O95319 508 aaKnown RBP23.04■■□□□ 1.28
CLK3-221ENST00000568139 HIRAP54198 1017 aaPredicted RBP23.04■■□□□ 1.28
CLK3-221ENST00000568139 GRM1Q13255 1194 aa23.04■■□□□ 1.28
CLK3-221ENST00000568139 TMC4Q7Z404 712 aa23.04■■□□□ 1.28
CLK3-221ENST00000568139 HHIPL1Q96JK4 782 aa23.04■■□□□ 1.28
CLK3-221ENST00000568139 GLIS2Q9BZE0 524 aaPredicted RBP23.04■■□□□ 1.28
CLK3-221ENST00000568139 LRRC37AA6NMS7 1700 aa23.03■■□□□ 1.28
CLK3-221ENST00000568139 DUOX1Q9NRD9 1551 aa23.03■■□□□ 1.28
CLK3-221ENST00000568139 YDJCA8MPS7 323 aa23.03■■□□□ 1.28
CLK3-221ENST00000568139 KRT24Q2M2I5 525 aa23.03■■□□□ 1.28
CLK3-221ENST00000568139 BCL2L13Q9BXK5 485 aa23.03■■□□□ 1.28
CLK3-221ENST00000568139 DDX60Q8IY21 1712 aaKnown RBP23.02■■□□□ 1.28
CLK3-221ENST00000568139 AOC2O75106 756 aa23.02■■□□□ 1.28
CLK3-221ENST00000568139 PLBD2Q8NHP8 589 aa23.01■■□□□ 1.27
CLK3-221ENST00000568139 TRPM4Q8TD43 1214 aa23.01■■□□□ 1.27
CLK3-221ENST00000568139 CNOT7Q9UIV1 285 aaKnown RBP23.01■■□□□ 1.27
CLK3-221ENST00000568139 CDC37L1Q7L3B6 337 aa23■■□□□ 1.27
CLK3-221ENST00000568139 CHPF2Q9P2E5 772 aa23■■□□□ 1.27
CLK3-221ENST00000568139 SF3B3Q15393 1217 aaKnown RBP22.99■■□□□ 1.27
CLK3-221ENST00000568139 NEUROD2Q15784 382 aa22.99■■□□□ 1.27
CLK3-221ENST00000568139 ISCA1Q9BUE6 129 aa22.99■■□□□ 1.27
CLK3-221ENST00000568139 TRIM35Q9UPQ4 493 aa22.99■■□□□ 1.27
CLK3-221ENST00000568139 SHTN1A0MZ66 631 aa22.98■■□□□ 1.27
CLK3-221ENST00000568139 H7C1D1 291 aa22.98■■□□□ 1.27
CLK3-221ENST00000568139 HOXB7P09629 217 aa22.98■■□□□ 1.27
CLK3-221ENST00000568139 ANKRD13DQ6ZTN6 518 aa22.98■■□□□ 1.27
CLK3-221ENST00000568139 DPF2Q92785 391 aa22.98■■□□□ 1.27
CLK3-221ENST00000568139 CA12O43570 354 aa22.97■■□□□ 1.27
CLK3-221ENST00000568139 WASHC4Q2M389 1173 aa22.97■■□□□ 1.27
CLK3-221ENST00000568139 MICALL2Q8IY33 904 aa22.97■■□□□ 1.27
CLK3-221ENST00000568139 CCDC146Q8IYE0 955 aa22.97■■□□□ 1.27
CLK3-221ENST00000568139 ZNF428Q96B54 188 aa22.97■■□□□ 1.27
CLK3-221ENST00000568139 TSKSQ9UJT2 592 aa22.97■■□□□ 1.27
CLK3-221ENST00000568139 LAS1LQ9Y4W2 734 aaKnown RBP22.97■■□□□ 1.27
CLK3-221ENST00000568139 POLR2AP24928 1970 aaKnown RBP22.97■■□□□ 1.27
CLK3-221ENST00000568139 BRPF1P55201 1214 aaPredicted RBP22.96■■□□□ 1.27
CLK3-221ENST00000568139 HDGFL1Q5TGJ6 251 aa22.96■■□□□ 1.27
CLK3-221ENST00000568139 CELF1Q92879 486 aaKnown RBP22.96■■□□□ 1.27
CLK3-221ENST00000568139 RUNDC1Q96C34 613 aa22.96■■□□□ 1.27
CLK3-221ENST00000568139 FAM89AQ96GI7 184 aa22.96■■□□□ 1.27
CLK3-221ENST00000568139 ZNF408Q9H9D4 720 aa22.96■■□□□ 1.27
CLK3-221ENST00000568139 DBF4Q9UBU7 674 aaPredicted RBP22.96■■□□□ 1.27
CLK3-221ENST00000568139 ZBTB12Q9Y330 459 aaPredicted RBP22.96■■□□□ 1.27
CLK3-221ENST00000568139 PSMD14O00487 310 aa22.95■■□□□ 1.26
CLK3-221ENST00000568139 CASP8AP2Q9UKL3 1982 aa22.95■■□□□ 1.26
CLK3-221ENST00000568139 NSFL1CQ9UNZ2 370 aaKnown RBP22.95■■□□□ 1.26
CLK3-221ENST00000568139 ATP5J2-PTCD1G3V325 749 aa22.94■■□□□ 1.26
CLK3-221ENST00000568139 TRIM28Q13263 835 aaKnown RBP22.94■■□□□ 1.26
CLK3-221ENST00000568139 USP48Q86UV5 1035 aa22.94■■□□□ 1.26
CLK3-221ENST00000568139 DBNDD1Q9H9R9 158 aa22.94■■□□□ 1.26
CLK3-221ENST00000568139 POLLQ9UGP5 575 aa22.94■■□□□ 1.26
CLK3-221ENST00000568139 COL4A1P02462 1669 aa22.93■■□□□ 1.26
CLK3-221ENST00000568139 MYBBP1AQ9BQG0 1328 aaKnown RBP22.93■■□□□ 1.26
CLK3-221ENST00000568139 SAMD7Q7Z3H4 446 aa22.93■■□□□ 1.26
CLK3-221ENST00000568139 HYPKQ9NX55 129 aa22.93■■□□□ 1.26
CLK3-221ENST00000568139 GPSM2P81274 684 aa22.92■■□□□ 1.26
CLK3-221ENST00000568139 FAM161AQ3B820 660 aa22.92■■□□□ 1.26
CLK3-221ENST00000568139 CCDC85CA6NKD9 419 aa22.91■■□□□ 1.26
CLK3-221ENST00000568139 C6orf229H3BNL8 230 aa22.91■■□□□ 1.26
CLK3-221ENST00000568139 RIMBP2O15034 1052 aa22.91■■□□□ 1.26
CLK3-221ENST00000568139 RPS12P25398 132 aaKnown RBP22.91■■□□□ 1.26
CLK3-221ENST00000568139 RGS19P49795 217 aa22.91■■□□□ 1.26
CLK3-221ENST00000568139 CFAP44Q96MT7 982 aa22.91■■□□□ 1.26
CLK3-221ENST00000568139 IRS4O14654 1257 aaPredicted RBP22.9■■□□□ 1.26
CLK3-221ENST00000568139 ECE2O60344 883 aa22.9■■□□□ 1.26
CLK3-221ENST00000568139 RPS8P62241 208 aaKnown RBP22.9■■□□□ 1.26
CLK3-221ENST00000568139 NOGQ13253 232 aa22.9■■□□□ 1.26
CLK3-221ENST00000568139 DUSP27Q5VZP5 1158 aa22.9■■□□□ 1.26
CLK3-221ENST00000568139 DLK2Q6UY11 383 aa22.9■■□□□ 1.26
CLK3-221ENST00000568139 EYA3Q99504 573 aa22.9■■□□□ 1.26
CLK3-221ENST00000568139 KCNQ5Q9NR82 932 aa22.9■■□□□ 1.26
CLK3-221ENST00000568139 RTL9Q8NET4 1388 aa22.89■■□□□ 1.26
CLK3-221ENST00000568139 EGFRP00533 1210 aa22.89■■□□□ 1.25
CLK3-221ENST00000568139 HUNKP57058 714 aa22.89■■□□□ 1.25
CLK3-221ENST00000568139 TBC1D10BQ4KMP7 808 aaPredicted RBP22.89■■□□□ 1.25
CLK3-221ENST00000568139 RTL5Q5HYW3 569 aaPredicted RBP22.89■■□□□ 1.25
CLK3-221ENST00000568139 TBC1D16Q8TBP0 767 aa22.89■■□□□ 1.25
CLK3-221ENST00000568139 ZIC5Q96T25 663 aa22.89■■□□□ 1.25
CLK3-221ENST00000568139 WDR43Q15061 677 aaKnown RBP eCLIP22.88■■□□□ 1.25
CLK3-221ENST00000568139 DOK7Q18PE1 504 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms