RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SPEF2Q9C093 1822 aa11.76□□□□□ -0.53
VPS35-206ENST00000565228 WTIPA6NIX2 430 aaPredicted RBP11.76□□□□□ -0.53
VPS35-206ENST00000565228 CT47B1P0C2W7 299 aaPredicted RBP11.76□□□□□ -0.53
VPS35-206ENST00000565228 NBPF7P0C2Y1 421 aaPredicted RBP11.76□□□□□ -0.53
VPS35-206ENST00000565228 FOXO4P98177 505 aa11.76□□□□□ -0.53
VPS35-206ENST00000565228 ARHGAP27Q6ZUM4 889 aa11.76□□□□□ -0.53
VPS35-206ENST00000565228 UBE3BQ7Z3V4 1068 aa11.76□□□□□ -0.53
VPS35-206ENST00000565228 LRRC37AA6NMS7 1700 aa11.76□□□□□ -0.53
VPS35-206ENST00000565228 LTBP1Q14766 1721 aa11.76□□□□□ -0.53
VPS35-206ENST00000565228 RNF123Q5XPI4 1314 aa11.76□□□□□ -0.53
VPS35-206ENST00000565228 CDHR2Q9BYE9 1310 aa11.76□□□□□ -0.53
VPS35-206ENST00000565228 DUOX1Q9NRD9 1551 aa11.75□□□□□ -0.53
VPS35-206ENST00000565228 SLC4A10Q6U841 1118 aa11.75□□□□□ -0.53
VPS35-206ENST00000565228 TTLL11Q8NHH1 800 aa11.75□□□□□ -0.53
VPS35-206ENST00000565228 CNKSR1Q969H4 720 aa11.75□□□□□ -0.53
VPS35-206ENST00000565228 NLRP3Q96P20 1036 aa11.75□□□□□ -0.53
VPS35-206ENST00000565228 CRAMP1Q96RY5 1269 aa11.75□□□□□ -0.53
VPS35-206ENST00000565228 GRIN3BO60391 1043 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 NPM3O75607 178 aaKnown RBP11.74□□□□□ -0.53
VPS35-206ENST00000565228 RLBP1P12271 317 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 TRIM27P14373 513 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 SUCLG2Q96I99 432 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 YTHDC1Q96MU7 727 aaKnown RBP11.74□□□□□ -0.53
VPS35-206ENST00000565228 CHMP4AQ9BY43 222 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 USP44Q9H0E7 712 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 PDZRN3Q9UPQ7 1066 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 UTYO14607 1347 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 PTPRCP08575 1304 aa11.74□□□□□ -0.53
VPS35-206ENST00000565228 DICER1Q9UPY3 1922 aaKnown RBP11.74□□□□□ -0.53
VPS35-206ENST00000565228 PDE8AO60658 829 aa11.73□□□□□ -0.53
VPS35-206ENST00000565228 CSF1RP07333 972 aa11.73□□□□□ -0.53
VPS35-206ENST00000565228 CTSWP56202 376 aa11.73□□□□□ -0.53
VPS35-206ENST00000565228 PLA2G12BQ9BX93 195 aa11.73□□□□□ -0.53
VPS35-206ENST00000565228 GREM2Q9H772 168 aa11.73□□□□□ -0.53
VPS35-206ENST00000565228 A0A1B0GUL6 1792 aa11.72□□□□□ -0.53
VPS35-206ENST00000565228 GRM8O00222 908 aa11.72□□□□□ -0.53
VPS35-206ENST00000565228 PPEF1O14829 653 aaPredicted RBP11.72□□□□□ -0.53
VPS35-206ENST00000565228 NEXNQ0ZGT2 675 aa11.72□□□□□ -0.53
VPS35-206ENST00000565228 GRAPQ13588 217 aa11.72□□□□□ -0.53
VPS35-206ENST00000565228 ANKRD44Q8N8A2 993 aa11.72□□□□□ -0.53
VPS35-206ENST00000565228 GRAPLQ8TC17 118 aaPredicted RBP11.72□□□□□ -0.53
VPS35-206ENST00000565228 RPGRQ92834 1020 aaKnown RBP11.72□□□□□ -0.53
VPS35-206ENST00000565228 RBM17Q96I25 401 aaKnown RBP11.72□□□□□ -0.53
VPS35-206ENST00000565228 TIAM2Q8IVF5 1701 aa11.72□□□□□ -0.53
VPS35-206ENST00000565228 ALDH1L1O75891 902 aa11.71□□□□□ -0.53
VPS35-206ENST00000565228 FAM161AQ3B820 660 aa11.71□□□□□ -0.53
VPS35-206ENST00000565228 C9orf131Q5VYM1 1079 aa11.71□□□□□ -0.53
VPS35-206ENST00000565228 SRCIN1Q9C0H9 1055 aa11.71□□□□□ -0.53
VPS35-206ENST00000565228 ATP6V0A2Q9Y487 856 aa11.71□□□□□ -0.53
VPS35-206ENST00000565228 PLIN1O60240 522 aa11.7□□□□□ -0.54
VPS35-206ENST00000565228 ALDH1B1P30837 517 aa11.7□□□□□ -0.54
VPS35-206ENST00000565228 CLUAP1Q96AJ1 413 aa11.7□□□□□ -0.54
VPS35-206ENST00000565228 ZNF594Q96JF6 807 aaPredicted RBP11.7□□□□□ -0.54
VPS35-206ENST00000565228 GPR101Q96P66 508 aaPredicted RBP11.7□□□□□ -0.54
VPS35-206ENST00000565228 MEIS3Q99687 375 aa11.7□□□□□ -0.54
VPS35-206ENST00000565228 LTBP3Q9NS15 1303 aa11.69□□□□□ -0.54
VPS35-206ENST00000565228 GPSM2P81274 684 aa11.69□□□□□ -0.54
VPS35-206ENST00000565228 CCDC93Q567U6 631 aa11.69□□□□□ -0.54
VPS35-206ENST00000565228 INTS3Q68E01 1043 aaKnown RBP11.69□□□□□ -0.54
VPS35-206ENST00000565228 ATF7IPQ6VMQ6 1270 aa11.69□□□□□ -0.54
VPS35-206ENST00000565228 DDX46Q7L014 1031 aaKnown RBP11.69□□□□□ -0.54
VPS35-206ENST00000565228 TMEM57Q8N5G2 664 aa11.69□□□□□ -0.54
VPS35-206ENST00000565228 ARHGAP45Q92619 1136 aa11.69□□□□□ -0.54
VPS35-206ENST00000565228 FRAT1Q92837 279 aaPredicted RBP11.69□□□□□ -0.54
VPS35-206ENST00000565228 ZNF277Q9NRM2 450 aaPredicted RBP11.69□□□□□ -0.54
VPS35-206ENST00000565228 RTL9Q8NET4 1388 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 SNAP23O00161 211 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 BBOX1O75936 387 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 RPS8P62241 208 aaKnown RBP11.68□□□□□ -0.54
VPS35-206ENST00000565228 FKBP4Q02790 459 aaKnown RBP eCLIP11.68□□□□□ -0.54
VPS35-206ENST00000565228 RABL6Q3YEC7 729 aaPredicted RBP11.68□□□□□ -0.54
VPS35-206ENST00000565228 C20orf194Q5TEA3 1177 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 LMBR1LQ6UX01 489 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 SP8Q8IXZ3 490 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 BICC1Q9H694 974 aaKnown RBP11.68□□□□□ -0.54
VPS35-206ENST00000565228 RNF181Q9P0P0 153 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 POLLQ9UGP5 575 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 SCN9AQ15858 1988 aa11.68□□□□□ -0.54
VPS35-206ENST00000565228 KIF16BQ96L93 1317 aa11.67□□□□□ -0.54
VPS35-206ENST00000565228 ITGA6P23229 1130 aa11.67□□□□□ -0.54
VPS35-206ENST00000565228 RFX5P48382 616 aaPredicted RBP11.67□□□□□ -0.54
VPS35-206ENST00000565228 CCDC152Q4G0S7 254 aa11.67□□□□□ -0.54
VPS35-206ENST00000565228 KLHDC4Q8TBB5 520 aa11.67□□□□□ -0.54
VPS35-206ENST00000565228 PANK1Q8TE04 598 aa11.67□□□□□ -0.54
VPS35-206ENST00000565228 RTFDC1Q9BY42 306 aaPredicted RBP11.67□□□□□ -0.54
VPS35-206ENST00000565228 PUS3Q9BZE2 481 aaKnown RBP11.67□□□□□ -0.54
VPS35-206ENST00000565228 API5Q9BZZ5 524 aaKnown RBP11.67□□□□□ -0.54
VPS35-206ENST00000565228 TAOK3Q9H2K8 898 aa11.67□□□□□ -0.54
VPS35-206ENST00000565228 ZNF646O15015 1829 aaPredicted RBP11.67□□□□□ -0.54
VPS35-206ENST00000565228 POTECB2RU33 542 aa11.66□□□□□ -0.54
VPS35-206ENST00000565228 LMNB1P20700 586 aa11.66□□□□□ -0.54
VPS35-206ENST00000565228 KLRK1P26718 216 aa11.66□□□□□ -0.54
VPS35-206ENST00000565228 C1QBPQ07021 282 aaKnown RBP11.66□□□□□ -0.54
VPS35-206ENST00000565228 ZKSCAN2Q63HK3 967 aa11.66□□□□□ -0.54
VPS35-206ENST00000565228 PSMD1Q99460 953 aa11.66□□□□□ -0.54
VPS35-206ENST00000565228 C9orf78Q9NZ63 289 aaPredicted RBP11.66□□□□□ -0.54
VPS35-206ENST00000565228 MINPP1Q9UNW1 487 aa11.66□□□□□ -0.54
VPS35-206ENST00000565228 ZNF541Q9H0D2 1346 aa11.65□□□□□ -0.54
VPS35-206ENST00000565228 IRS2Q9Y4H2 1338 aa11.65□□□□□ -0.54
VPS35-206ENST00000565228 CCT4P50991 539 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms