RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 RFC4P35249 363 aa20.47■□□□□ 0.87
LDLR-206ENST00000557958 TRMT112Q9UI30 125 aaKnown RBP20.47■□□□□ 0.87
LDLR-206ENST00000557958 NIP7Q9Y221 180 aaKnown RBP eCLIP20.47■□□□□ 0.87
LDLR-206ENST00000557958 ZNF652Q9Y2D9 606 aa20.47■□□□□ 0.87
LDLR-206ENST00000557958 SYNE4Q8N205 404 aa20.46■□□□□ 0.87
LDLR-206ENST00000557958 KLHDC4Q8TBB5 520 aa20.46■□□□□ 0.87
LDLR-206ENST00000557958 EAF2Q96CJ1 260 aaPredicted RBP20.46■□□□□ 0.87
LDLR-206ENST00000557958 CICQ96RK0 1608 aaPredicted RBP20.46■□□□□ 0.87
LDLR-206ENST00000557958 ZNF34Q8IZ26 560 aa20.45■□□□□ 0.86
LDLR-206ENST00000557958 ZBTB38Q8NAP3 1195 aaPredicted RBP20.45■□□□□ 0.86
LDLR-206ENST00000557958 RUFY2Q8WXA3 655 aa20.45■□□□□ 0.86
LDLR-206ENST00000557958 EVI5LQ96CN4 794 aa20.45■□□□□ 0.86
LDLR-206ENST00000557958 AK9Q5TCS8 1911 aa20.44■□□□□ 0.86
LDLR-206ENST00000557958 UBN2Q6ZU65 1347 aa20.44■□□□□ 0.86
LDLR-206ENST00000557958 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.44■□□□□ 0.86
LDLR-206ENST00000557958 HIP1O00291 1037 aa20.44■□□□□ 0.86
LDLR-206ENST00000557958 EN1Q05925 392 aaPredicted RBP20.44■□□□□ 0.86
LDLR-206ENST00000557958 SF3B2Q13435 895 aaKnown RBP20.44■□□□□ 0.86
LDLR-206ENST00000557958 PLA2G12BQ9BX93 195 aa20.44■□□□□ 0.86
LDLR-206ENST00000557958 ANO2Q9NQ90 1003 aa20.44■□□□□ 0.86
LDLR-206ENST00000557958 NARFQ9UHQ1 456 aa20.44■□□□□ 0.86
LDLR-206ENST00000557958 RREB1Q92766 1687 aa20.44■□□□□ 0.86
LDLR-206ENST00000557958 CDHR2Q9BYE9 1310 aa20.44■□□□□ 0.86
LDLR-206ENST00000557958 SUSD4Q5VX71 490 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 IL27Q8NEV9 243 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 SLKQ9H2G2 1235 aaPredicted RBP20.43■□□□□ 0.86
LDLR-206ENST00000557958 DIAPH3Q9NSV4 1193 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 FBXO3Q9UK99 471 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 C4BP0C0L5 1744 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 ST18O60284 1047 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 MAP4K4O95819 1239 aaPredicted RBP20.43■□□□□ 0.86
LDLR-206ENST00000557958 IL15P40933 162 aaPredicted RBP20.43■□□□□ 0.86
LDLR-206ENST00000557958 TNNI3KQ59H18 835 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 CCDC85AQ96PX6 553 aaPredicted RBP20.43■□□□□ 0.86
LDLR-206ENST00000557958 CCDC8Q9H0W5 538 aaPredicted RBP20.43■□□□□ 0.86
LDLR-206ENST00000557958 TFCP2L1Q9NZI6 479 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 FPGT-TNNI3KV9GXZ4 949 aa20.43■□□□□ 0.86
LDLR-206ENST00000557958 CIAO1O76071 339 aa20.42■□□□□ 0.86
LDLR-206ENST00000557958 ANAPC15P60006 121 aa20.42■□□□□ 0.86
LDLR-206ENST00000557958 TFCP2Q12800 502 aa20.42■□□□□ 0.86
LDLR-206ENST00000557958 CCDC57Q2TAC2 916 aa20.42■□□□□ 0.86
LDLR-206ENST00000557958 K7ELQ4 463 aaPredicted RBP20.41■□□□□ 0.86
LDLR-206ENST00000557958 EZH2Q15910 746 aaKnown RBP20.41■□□□□ 0.86
LDLR-206ENST00000557958 CLEC4GQ6UXB4 293 aa20.41■□□□□ 0.86
LDLR-206ENST00000557958 KIAA1211Q6ZU35 1233 aa20.41■□□□□ 0.86
LDLR-206ENST00000557958 UTP14AQ9BVJ6 771 aaKnown RBP20.41■□□□□ 0.86
LDLR-206ENST00000557958 GPR108Q9NPR9 543 aa20.41■□□□□ 0.86
LDLR-206ENST00000557958 TAF1LQ8IZX4 1826 aa20.41■□□□□ 0.86
LDLR-206ENST00000557958 TBC1D9BQ66K14 1250 aa20.41■□□□□ 0.86
LDLR-206ENST00000557958 NUP98P52948 1817 aa20.4■□□□□ 0.86
LDLR-206ENST00000557958 IRS4O14654 1257 aaPredicted RBP20.4■□□□□ 0.86
LDLR-206ENST00000557958 SGSM2O43147 1006 aa20.4■□□□□ 0.86
LDLR-206ENST00000557958 HSP90AA1P07900 732 aaKnown RBP20.4■□□□□ 0.86
LDLR-206ENST00000557958 ANTXR1Q9H6X2 564 aa20.4■□□□□ 0.86
LDLR-206ENST00000557958 BCL2L12Q9HB09 334 aa20.4■□□□□ 0.86
LDLR-206ENST00000557958 ANKRD36CQ5JPF3 1778 aa20.4■□□□□ 0.86
LDLR-206ENST00000557958 EYA2O00167 538 aa20.39■□□□□ 0.86
LDLR-206ENST00000557958 PARP10Q53GL7 1025 aa20.39■□□□□ 0.86
LDLR-206ENST00000557958 ATP5JP18859 108 aa20.39■□□□□ 0.85
LDLR-206ENST00000557958 GTF2E1P29083 439 aaPredicted RBP20.39■□□□□ 0.85
LDLR-206ENST00000557958 ZNF827Q17R98 1081 aa20.39■□□□□ 0.85
LDLR-206ENST00000557958 SETDB2Q96T68 719 aa20.39■□□□□ 0.85
LDLR-206ENST00000557958 HMGB2P26583 209 aaKnown RBP20.38■□□□□ 0.85
LDLR-206ENST00000557958 TAF7LQ5H9L4 462 aa20.38■□□□□ 0.85
LDLR-206ENST00000557958 TLR7Q9NYK1 1049 aaKnown RBP20.38■□□□□ 0.85
LDLR-206ENST00000557958 HCLS1P14317 486 aaPredicted RBP20.37■□□□□ 0.85
LDLR-206ENST00000557958 IFIT5Q13325 482 aaKnown RBP20.37■□□□□ 0.85
LDLR-206ENST00000557958 DEFB132Q7Z7B7 95 aa20.37■□□□□ 0.85
LDLR-206ENST00000557958 CHMP5Q9NZZ3 219 aa20.37■□□□□ 0.85
LDLR-206ENST00000557958 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.37■□□□□ 0.85
LDLR-206ENST00000557958 NPHP1O15259 732 aa20.37■□□□□ 0.85
LDLR-206ENST00000557958 HSP90B1P14625 803 aaKnown RBP20.37■□□□□ 0.85
LDLR-206ENST00000557958 ADRA2BP18089 450 aa20.37■□□□□ 0.85
LDLR-206ENST00000557958 SSFA2P28290 1259 aa20.37■□□□□ 0.85
LDLR-206ENST00000557958 CWC27Q6UX04 472 aaKnown RBP20.37■□□□□ 0.85
LDLR-206ENST00000557958 ATG9AQ7Z3C6 839 aa20.37■□□□□ 0.85
LDLR-206ENST00000557958 DBNLQ9UJU6 430 aaKnown RBP20.37■□□□□ 0.85
LDLR-206ENST00000557958 SH3TC1Q8TE82 1336 aa20.36■□□□□ 0.85
LDLR-206ENST00000557958 RAD50Q92878 1312 aa20.36■□□□□ 0.85
LDLR-206ENST00000557958 CSF1RP07333 972 aa20.36■□□□□ 0.85
LDLR-206ENST00000557958 NFKBIBQ15653 356 aa20.36■□□□□ 0.85
LDLR-206ENST00000557958 BOLA2Q9H3K6 86 aa20.36■□□□□ 0.85
LDLR-206ENST00000557958 BAG6P46379 1132 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 SPRYD3Q8NCJ5 442 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 CAMKK2Q96RR4 588 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 FSD1Q9BTV5 496 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 CEP126Q9P2H0 1117 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 AKAP2Q9Y2D5 859 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 RFX7Q2KHR2 1363 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 MCM2P49736 904 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 IL17RAQ96F46 866 aa20.35■□□□□ 0.85
LDLR-206ENST00000557958 CIZ1Q9ULV3 898 aaPredicted RBP20.35■□□□□ 0.85
LDLR-206ENST00000557958 PDE8AO60658 829 aa20.34■□□□□ 0.85
LDLR-206ENST00000557958 NTSR2O95665 410 aa20.34■□□□□ 0.85
LDLR-206ENST00000557958 CTSWP56202 376 aa20.34■□□□□ 0.85
LDLR-206ENST00000557958 NBPF5PQ86XG9 351 aaPredicted RBP20.34■□□□□ 0.85
LDLR-206ENST00000557958 CCDC24Q8N4L8 307 aa20.34■□□□□ 0.85
LDLR-206ENST00000557958 AKT1S1Q96B36 256 aa20.34■□□□□ 0.85
LDLR-206ENST00000557958 ZNF594Q96JF6 807 aaPredicted RBP20.34■□□□□ 0.85
LDLR-206ENST00000557958 ERFEQ4G0M1 354 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms