RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 ZBTB3Q9H5J0 574 aa19.4■□□□□ 0.7
VPS29-209ENST00000551655 ABCC4O15439 1325 aa19.4■□□□□ 0.7
VPS29-209ENST00000551655 KIAA2012Q0VF49 1180 aa19.39■□□□□ 0.69
VPS29-209ENST00000551655 CNGB1Q14028 1251 aaPredicted RBP19.39■□□□□ 0.69
VPS29-209ENST00000551655 DPP8Q6V1X1 898 aaPredicted RBP19.39■□□□□ 0.69
VPS29-209ENST00000551655 MAP3K15Q6ZN16 1313 aa19.39■□□□□ 0.69
VPS29-209ENST00000551655 LAMB2P55268 1798 aa19.39■□□□□ 0.69
VPS29-209ENST00000551655 H7C1D1 291 aa19.38■□□□□ 0.69
VPS29-209ENST00000551655 TAF1P21675 1872 aa19.38■□□□□ 0.69
VPS29-209ENST00000551655 PRKAR2BP31323 418 aa19.38■□□□□ 0.69
VPS29-209ENST00000551655 EIF4G2P78344 907 aaKnown RBP eCLIP19.38■□□□□ 0.69
VPS29-209ENST00000551655 TNIP1Q15025 636 aa19.38■□□□□ 0.69
VPS29-209ENST00000551655 RBM26Q5T8P6 1007 aaKnown RBP19.38■□□□□ 0.69
VPS29-209ENST00000551655 SUPT20HQ8NEM7 779 aa19.38■□□□□ 0.69
VPS29-209ENST00000551655 VPS33BQ9H267 617 aa19.38■□□□□ 0.69
VPS29-209ENST00000551655 DUOX1Q9NRD9 1551 aa19.38■□□□□ 0.69
VPS29-209ENST00000551655 IBTKQ9P2D0 1353 aaPredicted RBP19.38■□□□□ 0.69
VPS29-209ENST00000551655 GCC1Q96CN9 775 aa19.37■□□□□ 0.69
VPS29-209ENST00000551655 MIS18AQ9NYP9 233 aa19.37■□□□□ 0.69
VPS29-209ENST00000551655 ASTN2O75129 1339 aaPredicted RBP19.36■□□□□ 0.69
VPS29-209ENST00000551655 ERVV-1B6SEH8 477 aa19.36■□□□□ 0.69
VPS29-209ENST00000551655 MPNDQ8N594 471 aa19.36■□□□□ 0.69
VPS29-209ENST00000551655 TMX4Q9H1E5 349 aaPredicted RBP19.36■□□□□ 0.69
VPS29-209ENST00000551655 RRP7AQ9Y3A4 280 aaKnown RBP19.36■□□□□ 0.69
VPS29-209ENST00000551655 MYL6BP14649 208 aa19.35■□□□□ 0.69
VPS29-209ENST00000551655 RASAL3Q86YV0 1011 aa19.35■□□□□ 0.69
VPS29-209ENST00000551655 ZNF34Q8IZ26 560 aa19.35■□□□□ 0.69
VPS29-209ENST00000551655 ZNF296Q8WUU4 475 aaPredicted RBP19.35■□□□□ 0.69
VPS29-209ENST00000551655 RSPH6AQ9H0K4 717 aa19.35■□□□□ 0.69
VPS29-209ENST00000551655 PSMD14O00487 310 aa19.34■□□□□ 0.69
VPS29-209ENST00000551655 TBC1D8O95759 1140 aa19.34■□□□□ 0.69
VPS29-209ENST00000551655 KIF6Q6ZMV9 814 aa19.34■□□□□ 0.69
VPS29-209ENST00000551655 NLRP3Q96P20 1036 aa19.34■□□□□ 0.69
VPS29-209ENST00000551655 HDAC9Q9UKV0 1011 aa19.34■□□□□ 0.69
VPS29-209ENST00000551655 DCPSQ96C86 337 aaKnown RBP19.33■□□□□ 0.68
VPS29-209ENST00000551655 HTTP42858 3142 aa19.33■□□□□ 0.68
VPS29-209ENST00000551655 SP8Q8IXZ3 490 aa19.32■□□□□ 0.68
VPS29-209ENST00000551655 DBNDD1Q9H9R9 158 aa19.32■□□□□ 0.68
VPS29-209ENST00000551655 RTF1Q92541 710 aaKnown RBP19.31■□□□□ 0.68
VPS29-209ENST00000551655 CDCA5Q96FF9 252 aa19.31■□□□□ 0.68
VPS29-209ENST00000551655 KCNQ5Q9NR82 932 aa19.31■□□□□ 0.68
VPS29-209ENST00000551655 GGA3Q9NZ52 723 aa19.31■□□□□ 0.68
VPS29-209ENST00000551655 ANKRD36CQ5JPF3 1778 aa19.3■□□□□ 0.68
VPS29-209ENST00000551655 FXR1P51114 621 aaKnown RBP eCLIP19.3■□□□□ 0.68
VPS29-209ENST00000551655 PKN2Q16513 984 aaKnown RBP19.3■□□□□ 0.68
VPS29-209ENST00000551655 DPF2Q92785 391 aa19.3■□□□□ 0.68
VPS29-209ENST00000551655 KDM3BQ7LBC6 1761 aa19.29■□□□□ 0.68
VPS29-209ENST00000551655 LRRC37AA6NMS7 1700 aa19.29■□□□□ 0.68
VPS29-209ENST00000551655 MOB2Q70IA6 237 aa19.29■□□□□ 0.68
VPS29-209ENST00000551655 CENPFP49454 3210 aa19.28■□□□□ 0.68
VPS29-209ENST00000551655 RIMBP2O15034 1052 aa19.28■□□□□ 0.68
VPS29-209ENST00000551655 PER1O15534 1290 aaPredicted RBP19.28■□□□□ 0.68
VPS29-209ENST00000551655 HCLS1P14317 486 aaPredicted RBP19.28■□□□□ 0.68
VPS29-209ENST00000551655 FBXO46Q6PJ61 603 aaPredicted RBP19.28■□□□□ 0.68
VPS29-209ENST00000551655 GIGYF2Q6Y7W6 1299 aaKnown RBP19.28■□□□□ 0.68
VPS29-209ENST00000551655 PPP1R42Q7Z4L9 355 aa19.28■□□□□ 0.68
VPS29-209ENST00000551655 RTL9Q8NET4 1388 aa19.28■□□□□ 0.68
VPS29-209ENST00000551655 COL4A1P02462 1669 aa19.27■□□□□ 0.68
VPS29-209ENST00000551655 BBOX1O75936 387 aa19.27■□□□□ 0.68
VPS29-209ENST00000551655 KIF4BQ2VIQ3 1234 aa19.27■□□□□ 0.68
VPS29-209ENST00000551655 SLC10A5Q5PT55 438 aa19.27■□□□□ 0.68
VPS29-209ENST00000551655 SULF1Q8IWU6 871 aa19.27■□□□□ 0.68
VPS29-209ENST00000551655 ZNF428Q96B54 188 aa19.27■□□□□ 0.68
VPS29-209ENST00000551655 UTP14AQ9BVJ6 771 aaKnown RBP19.27■□□□□ 0.68
VPS29-209ENST00000551655 SCAF8Q9UPN6 1271 aaKnown RBP19.27■□□□□ 0.68
VPS29-209ENST00000551655 POTEFA5A3E0 1075 aa19.26■□□□□ 0.67
VPS29-209ENST00000551655 TAF7Q15545 349 aaPredicted RBP19.26■□□□□ 0.67
VPS29-209ENST00000551655 THUMPD2Q9BTF0 503 aaKnown RBP19.26■□□□□ 0.67
VPS29-209ENST00000551655 PAPPA2Q9BXP8 1791 aa19.26■□□□□ 0.67
VPS29-209ENST00000551655 SCN9AQ15858 1988 aa19.26■□□□□ 0.67
VPS29-209ENST00000551655 GPR25O00155 361 aa19.25■□□□□ 0.67
VPS29-209ENST00000551655 MKRN3Q13064 507 aaKnown RBP19.25■□□□□ 0.67
VPS29-209ENST00000551655 GRAPQ13588 217 aa19.25■□□□□ 0.67
VPS29-209ENST00000551655 DOK7Q18PE1 504 aa19.25■□□□□ 0.67
VPS29-209ENST00000551655 GRAPLQ8TC17 118 aaPredicted RBP19.25■□□□□ 0.67
VPS29-209ENST00000551655 R3HDMLQ9H3Y0 253 aa19.25■□□□□ 0.67
VPS29-209ENST00000551655 BRCA2P51587 3418 aa19.25■□□□□ 0.67
VPS29-209ENST00000551655 ECE2O60344 883 aa19.24■□□□□ 0.67
VPS29-209ENST00000551655 WASHC4Q2M389 1173 aa19.24■□□□□ 0.67
VPS29-209ENST00000551655 PARP10Q53GL7 1025 aa19.24■□□□□ 0.67
VPS29-209ENST00000551655 REM2Q8IYK8 340 aaPredicted RBP19.24■□□□□ 0.67
VPS29-209ENST00000551655 TIMELESSQ9UNS1 1208 aa19.24■□□□□ 0.67
VPS29-209ENST00000551655 DDX60Q8IY21 1712 aaKnown RBP19.23■□□□□ 0.67
VPS29-209ENST00000551655 UBE2Q2LH0YL09 131 aa19.23■□□□□ 0.67
VPS29-209ENST00000551655 ANGEL2Q5VTE6 544 aaKnown RBP19.23■□□□□ 0.67
VPS29-209ENST00000551655 DDX46Q7L014 1031 aaKnown RBP19.23■□□□□ 0.67
VPS29-209ENST00000551655 SZT2Q5T011 3432 aa19.22■□□□□ 0.67
VPS29-209ENST00000551655 EIF4A1P60842 406 aaKnown RBP19.22■□□□□ 0.67
VPS29-209ENST00000551655 ANXA1P04083 346 aa19.21■□□□□ 0.67
VPS29-209ENST00000551655 U2AF1L5P0DN76 240 aaPredicted RBP19.21■□□□□ 0.67
VPS29-209ENST00000551655 RPS12P25398 132 aaKnown RBP19.21■□□□□ 0.67
VPS29-209ENST00000551655 U2AF1Q01081 240 aaKnown RBP eCLIP19.21■□□□□ 0.67
VPS29-209ENST00000551655 PRAMEF18Q5VWM3 479 aa19.21■□□□□ 0.67
VPS29-209ENST00000551655 POLLQ9UGP5 575 aa19.21■□□□□ 0.67
VPS29-209ENST00000551655 NSFL1CQ9UNZ2 370 aaKnown RBP19.21■□□□□ 0.67
VPS29-209ENST00000551655 DLG5Q8TDM6 1919 aa19.21■□□□□ 0.67
VPS29-209ENST00000551655 C6orf229H3BNL8 230 aa19.2■□□□□ 0.66
VPS29-209ENST00000551655 LRP10Q7Z4F1 713 aa19.2■□□□□ 0.66
VPS29-209ENST00000551655 GPSM2P81274 684 aa19.19■□□□□ 0.66
VPS29-209ENST00000551655 SCARF1Q14162 830 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms