RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 CCDC83Q8IWF9 413 aa22.22■■□□□ 1.15
PRPF40B-208ENST00000548436 SMC3Q9UQE7 1217 aa22.22■■□□□ 1.15
PRPF40B-208ENST00000548436 CHGBP05060 677 aa22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 SYT1P21579 422 aa22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 DNAJC2Q99543 621 aaKnown RBP22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 HAUS7Q99871 368 aa22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 TMOD3Q9NYL9 352 aa22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 ITGB4P16144 1822 aa22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 TAF5LO75529 589 aa22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 ST3GAL1Q11201 340 aa22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 ZSCAN31Q96LW9 406 aaPredicted RBP22.21■■□□□ 1.15
PRPF40B-208ENST00000548436 MBD3O95983 291 aa22.2■■□□□ 1.14
PRPF40B-208ENST00000548436 NASPP49321 788 aaPredicted RBP22.2■■□□□ 1.14
PRPF40B-208ENST00000548436 ME3Q16798 604 aa22.2■■□□□ 1.14
PRPF40B-208ENST00000548436 GDPD2Q9HCC8 539 aa22.2■■□□□ 1.14
PRPF40B-208ENST00000548436 SH2B1Q9NRF2 756 aaPredicted RBP22.2■■□□□ 1.14
PRPF40B-208ENST00000548436 ZNF609O15014 1411 aa22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 STX6O43752 255 aa22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 DTNBO60941 627 aa22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 ZSCAN22P10073 491 aaPredicted RBP22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 PSMA5P28066 241 aa22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 PRIM1P49642 420 aaKnown RBP22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 RNF20Q5VTR2 975 aa22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 ZNF594Q96JF6 807 aaPredicted RBP22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 ASAP1Q9ULH1 1129 aa22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 TPCN1Q9ULQ1 816 aa22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 CCDC9Q9Y3X0 531 aaKnown RBP22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 RFX7Q2KHR2 1363 aa22.19■■□□□ 1.14
PRPF40B-208ENST00000548436 GJB2P29033 226 aa22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 ISCA1Q9BUE6 129 aa22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 LRRC24Q50LG9 513 aa22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 USPL1Q5W0Q7 1092 aa22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 DDX46Q7L014 1031 aaKnown RBP22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 USP48Q86UV5 1035 aa22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 PIGBQ92521 554 aa22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 SEC62Q99442 399 aaKnown RBP22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 BTG4Q9NY30 223 aa22.18■■□□□ 1.14
PRPF40B-208ENST00000548436 GADD45BO75293 160 aaPredicted RBP22.17■■□□□ 1.14
PRPF40B-208ENST00000548436 IL15P40933 162 aaPredicted RBP22.17■■□□□ 1.14
PRPF40B-208ENST00000548436 TIMM10P62072 90 aa22.17■■□□□ 1.14
PRPF40B-208ENST00000548436 NECAB1Q8N987 351 aa22.17■■□□□ 1.14
PRPF40B-208ENST00000548436 NEUROD6Q96NK8 337 aa22.17■■□□□ 1.14
PRPF40B-208ENST00000548436 RBSNQ9H1K0 784 aa22.17■■□□□ 1.14
PRPF40B-208ENST00000548436 TSGA10IPQ3SY00 556 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 BLOC1S2Q6QNY1 142 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 CCDC129Q6ZRS4 1044 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 GPR108Q9NPR9 543 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 KAT6BQ8WYB5 2073 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 SYCE3A1L190 88 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 EYA2O00167 538 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 RPS6KB1P23443 525 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 TCIRG1Q13488 830 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 DNAJC10Q8IXB1 793 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 TCEANC2Q96MN5 208 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 HMG20BQ9P0W2 317 aa22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 ZNF330Q9Y3S2 320 aaPredicted RBP22.16■■□□□ 1.14
PRPF40B-208ENST00000548436 F13A1P00488 732 aa22.15■■□□□ 1.14
PRPF40B-208ENST00000548436 KBTBD3Q8NAB2 608 aa22.15■■□□□ 1.14
PRPF40B-208ENST00000548436 LRSAM1Q6UWE0 723 aa22.15■■□□□ 1.14
PRPF40B-208ENST00000548436 PUS3Q9BZE2 481 aaKnown RBP22.15■■□□□ 1.14
PRPF40B-208ENST00000548436 ATG3Q9NT62 314 aa22.15■■□□□ 1.14
PRPF40B-208ENST00000548436 CNPY2Q9Y2B0 182 aa22.15■■□□□ 1.14
PRPF40B-208ENST00000548436 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.14■■□□□ 1.13
PRPF40B-208ENST00000548436 MCMDC2Q4G0Z9 681 aa22.14■■□□□ 1.13
PRPF40B-208ENST00000548436 TMEM87AQ8NBN3 555 aa22.14■■□□□ 1.13
PRPF40B-208ENST00000548436 ALDH8A1Q9H2A2 487 aaPredicted RBP22.14■■□□□ 1.13
PRPF40B-208ENST00000548436 TOB2Q14106 344 aaPredicted RBP22.13■■□□□ 1.13
PRPF40B-208ENST00000548436 CIAO1O76071 339 aa22.13■■□□□ 1.13
PRPF40B-208ENST00000548436 VSIG10Q8N0Z9 540 aa22.13■■□□□ 1.13
PRPF40B-208ENST00000548436 PPP1R9BQ96SB3 815 aa22.13■■□□□ 1.13
PRPF40B-208ENST00000548436 MTMR6Q9Y217 621 aa22.13■■□□□ 1.13
PRPF40B-208ENST00000548436 PALLDQ8WX93 1383 aa22.12■■□□□ 1.13
PRPF40B-208ENST00000548436 GOLIM4O00461 696 aa22.12■■□□□ 1.13
PRPF40B-208ENST00000548436 CCDC173Q0VFZ6 552 aa22.12■■□□□ 1.13
PRPF40B-208ENST00000548436 TEX13AQ9BXU3 409 aaPredicted RBP22.12■■□□□ 1.13
PRPF40B-208ENST00000548436 PAG1Q9NWQ8 432 aa22.12■■□□□ 1.13
PRPF40B-208ENST00000548436 LAMA4Q16363 1823 aa22.12■■□□□ 1.13
PRPF40B-208ENST00000548436 SLFNL1Q499Z3 407 aa22.11■■□□□ 1.13
PRPF40B-208ENST00000548436 A0A1B0GUL7 405 aa22.11■■□□□ 1.13
PRPF40B-208ENST00000548436 TRIM28Q13263 835 aaKnown RBP22.11■■□□□ 1.13
PRPF40B-208ENST00000548436 ANKRD1Q15327 319 aa22.11■■□□□ 1.13
PRPF40B-208ENST00000548436 SH3TC1Q8TE82 1336 aa22.11■■□□□ 1.13
PRPF40B-208ENST00000548436 DISP2A7MBM2 1401 aa22.11■■□□□ 1.13
PRPF40B-208ENST00000548436 U3KPZ7 1027 aaPredicted RBP22.1■■□□□ 1.13
PRPF40B-208ENST00000548436 COL14A1Q05707 1796 aaKnown RBP22.1■■□□□ 1.13
PRPF40B-208ENST00000548436 KIF6Q6ZMV9 814 aa22.1■■□□□ 1.13
PRPF40B-208ENST00000548436 FAM89AQ96GI7 184 aa22.1■■□□□ 1.13
PRPF40B-208ENST00000548436 STARD3NLO95772 234 aa22.09■■□□□ 1.13
PRPF40B-208ENST00000548436 CYP21A2P08686 494 aa22.09■■□□□ 1.13
PRPF40B-208ENST00000548436 KRT32Q14532 448 aa22.09■■□□□ 1.13
PRPF40B-208ENST00000548436 TRIM44Q96DX7 344 aaPredicted RBP22.09■■□□□ 1.13
PRPF40B-208ENST00000548436 PCCAP05165 728 aaPredicted RBP22.08■■□□□ 1.13
PRPF40B-208ENST00000548436 CCDC57Q2TAC2 916 aa22.08■■□□□ 1.13
PRPF40B-208ENST00000548436 NEK1Q96PY6 1258 aa22.08■■□□□ 1.13
PRPF40B-208ENST00000548436 ATP6V1DQ9Y5K8 247 aa22.08■■□□□ 1.13
PRPF40B-208ENST00000548436 SPEF2Q9C093 1822 aa22.08■■□□□ 1.12
PRPF40B-208ENST00000548436 ANP32BQ92688 251 aaKnown RBP22.08■■□□□ 1.12
PRPF40B-208ENST00000548436 CCDC85AQ96PX6 553 aaPredicted RBP22.08■■□□□ 1.12
PRPF40B-208ENST00000548436 SLC4A9Q96Q91 983 aa22.08■■□□□ 1.12
PRPF40B-208ENST00000548436 IFIT1P09914 478 aaKnown RBP22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms