RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 TIAM2Q8IVF5 1701 aa16.89■□□□□ 0.29
DDX55-213ENST00000545042 DICER1Q9UPY3 1922 aaKnown RBP16.88■□□□□ 0.29
DDX55-213ENST00000545042 IARSP41252 1262 aaKnown RBP16.88■□□□□ 0.29
DDX55-213ENST00000545042 C16orf71Q8IYS4 520 aaPredicted RBP16.88■□□□□ 0.29
DDX55-213ENST00000545042 JARID2Q92833 1246 aaPredicted RBP16.88■□□□□ 0.29
DDX55-213ENST00000545042 CDCA7LQ96GN5 454 aa16.88■□□□□ 0.29
DDX55-213ENST00000545042 NMRK2Q9NPI5 230 aa16.88■□□□□ 0.29
DDX55-213ENST00000545042 CDHR2Q9BYE9 1310 aa16.88■□□□□ 0.29
DDX55-213ENST00000545042 SUPT20HQ8NEM7 779 aa16.87■□□□□ 0.29
DDX55-213ENST00000545042 JDP2Q8WYK2 163 aa16.87■□□□□ 0.29
DDX55-213ENST00000545042 KIF3CO14782 793 aa16.86■□□□□ 0.29
DDX55-213ENST00000545042 GCKRQ14397 625 aa16.86■□□□□ 0.29
DDX55-213ENST00000545042 DPP8Q6V1X1 898 aaPredicted RBP16.86■□□□□ 0.29
DDX55-213ENST00000545042 MPNDQ8N594 471 aa16.86■□□□□ 0.29
DDX55-213ENST00000545042 RRAGCQ9HB90 399 aa16.86■□□□□ 0.29
DDX55-213ENST00000545042 F6X3S4 739 aa16.85■□□□□ 0.29
DDX55-213ENST00000545042 CT47B1P0C2W7 299 aaPredicted RBP16.85■□□□□ 0.29
DDX55-213ENST00000545042 CTSWP56202 376 aa16.85■□□□□ 0.29
DDX55-213ENST00000545042 RPS8P62241 208 aaKnown RBP16.85■□□□□ 0.29
DDX55-213ENST00000545042 UBE3BQ7Z3V4 1068 aa16.85■□□□□ 0.29
DDX55-213ENST00000545042 TRMT2AQ8IZ69 625 aaKnown RBP16.85■□□□□ 0.29
DDX55-213ENST00000545042 CELF1Q92879 486 aaKnown RBP16.85■□□□□ 0.29
DDX55-213ENST00000545042 SNED1Q8TER0 1413 aa16.85■□□□□ 0.29
DDX55-213ENST00000545042 H7C1W4 665 aa16.84■□□□□ 0.29
DDX55-213ENST00000545042 VEGFAP15692 232 aaPredicted RBP16.84■□□□□ 0.29
DDX55-213ENST00000545042 ALDH1L2Q3SY69 923 aa16.84■□□□□ 0.29
DDX55-213ENST00000545042 LARGE2Q8N3Y3 721 aa16.84■□□□□ 0.29
DDX55-213ENST00000545042 MRPL50Q8N5N7 158 aaKnown RBP16.84■□□□□ 0.29
DDX55-213ENST00000545042 VPS33BQ9H267 617 aa16.84■□□□□ 0.29
DDX55-213ENST00000545042 PPIP5K2O43314 1243 aa16.83■□□□□ 0.28
DDX55-213ENST00000545042 TOMM70O94826 608 aa16.83■□□□□ 0.28
DDX55-213ENST00000545042 PTPRCP08575 1304 aa16.83■□□□□ 0.28
DDX55-213ENST00000545042 HNRNPUQ00839 825 aaKnown RBP eCLIP16.83■□□□□ 0.28
DDX55-213ENST00000545042 BEND3Q5T5X7 828 aa16.83■□□□□ 0.28
DDX55-213ENST00000545042 SLC4A10Q6U841 1118 aa16.83■□□□□ 0.28
DDX55-213ENST00000545042 CDC5LQ99459 802 aaKnown RBP16.83■□□□□ 0.28
DDX55-213ENST00000545042 EIF6P56537 245 aaKnown RBP16.82■□□□□ 0.28
DDX55-213ENST00000545042 SLC51AQ86UW1 340 aa16.82■□□□□ 0.28
DDX55-213ENST00000545042 NIM1KQ8IY84 436 aa16.82■□□□□ 0.28
DDX55-213ENST00000545042 SSH1Q8WYL5 1049 aa16.82■□□□□ 0.28
DDX55-213ENST00000545042 CCDC85AQ96PX6 553 aaPredicted RBP16.82■□□□□ 0.28
DDX55-213ENST00000545042 RTFDC1Q9BY42 306 aaPredicted RBP16.82■□□□□ 0.28
DDX55-213ENST00000545042 SEC31BQ9NQW1 1179 aa16.82■□□□□ 0.28
DDX55-213ENST00000545042 SMC4Q9NTJ3 1288 aa16.82■□□□□ 0.28
DDX55-213ENST00000545042 FZD9O00144 591 aa16.81■□□□□ 0.28
DDX55-213ENST00000545042 ALDH1L1O75891 902 aa16.81■□□□□ 0.28
DDX55-213ENST00000545042 DDNO94850 711 aaPredicted RBP16.81■□□□□ 0.28
DDX55-213ENST00000545042 ANKRD18AQ8IVF6 992 aa16.81■□□□□ 0.28
DDX55-213ENST00000545042 TTLL11Q8NHH1 800 aa16.81■□□□□ 0.28
DDX55-213ENST00000545042 PLA2G12BQ9BX93 195 aa16.81■□□□□ 0.28
DDX55-213ENST00000545042 SRCIN1Q9C0H9 1055 aa16.81■□□□□ 0.28
DDX55-213ENST00000545042 NSFL1CQ9UNZ2 370 aaKnown RBP16.81■□□□□ 0.28
DDX55-213ENST00000545042 TAF1P21675 1872 aa16.81■□□□□ 0.28
DDX55-213ENST00000545042 AOC3Q16853 763 aa16.8■□□□□ 0.28
DDX55-213ENST00000545042 RBM46Q8TBY0 533 aaKnown RBP16.8■□□□□ 0.28
DDX55-213ENST00000545042 BCL2L13Q9BXK5 485 aa16.8■□□□□ 0.28
DDX55-213ENST00000545042 C9orf78Q9NZ63 289 aaPredicted RBP16.8■□□□□ 0.28
DDX55-213ENST00000545042 MYH3P11055 1940 aa16.79■□□□□ 0.28
DDX55-213ENST00000545042 IQCA1LA6NCM1 817 aa16.79■□□□□ 0.28
DDX55-213ENST00000545042 GRM8O00222 908 aa16.79■□□□□ 0.28
DDX55-213ENST00000545042 GREM2Q9H772 168 aa16.79■□□□□ 0.28
DDX55-213ENST00000545042 ANKIB1Q9P2G1 1089 aa16.79■□□□□ 0.28
DDX55-213ENST00000545042 LRRC37AA6NMS7 1700 aa16.79■□□□□ 0.28
DDX55-213ENST00000545042 WDR90Q96KV7 1748 aa16.79■□□□□ 0.28
DDX55-213ENST00000545042 RTL9Q8NET4 1388 aa16.78■□□□□ 0.28
DDX55-213ENST00000545042 ZNF541Q9H0D2 1346 aa16.78■□□□□ 0.28
DDX55-213ENST00000545042 C6orf229H3BNL8 230 aa16.78■□□□□ 0.28
DDX55-213ENST00000545042 CASP7P55210 303 aa16.78■□□□□ 0.28
DDX55-213ENST00000545042 GPC2Q8N158 579 aa16.78■□□□□ 0.28
DDX55-213ENST00000545042 EYA3Q99504 573 aa16.78■□□□□ 0.28
DDX55-213ENST00000545042 IGHMBP2P38935 993 aaKnown RBP16.77■□□□□ 0.28
DDX55-213ENST00000545042 GPSM2P81274 684 aa16.77■□□□□ 0.28
DDX55-213ENST00000545042 KIAA2012Q0VF49 1180 aa16.77■□□□□ 0.28
DDX55-213ENST00000545042 WASHC4Q2M389 1173 aa16.77■□□□□ 0.28
DDX55-213ENST00000545042 L3MBTL3Q96JM7 780 aaPredicted RBP16.77■□□□□ 0.28
DDX55-213ENST00000545042 GJA3Q9Y6H8 435 aa16.77■□□□□ 0.28
DDX55-213ENST00000545042 CSF1RP07333 972 aa16.76■□□□□ 0.27
DDX55-213ENST00000545042 ITGA6P23229 1130 aa16.76■□□□□ 0.27
DDX55-213ENST00000545042 FSTL1Q12841 308 aa16.76■□□□□ 0.27
DDX55-213ENST00000545042 BSDC1Q9NW68 430 aaPredicted RBP16.76■□□□□ 0.27
DDX55-213ENST00000545042 PODXL2Q9NZ53 605 aa16.76■□□□□ 0.27
DDX55-213ENST00000545042 GGA1Q9UJY5 639 aa16.76■□□□□ 0.27
DDX55-213ENST00000545042 ZNRF3Q9ULT6 936 aa16.76■□□□□ 0.27
DDX55-213ENST00000545042 POTECB2RU33 542 aa16.75■□□□□ 0.27
DDX55-213ENST00000545042 UFL1O94874 794 aa16.75■□□□□ 0.27
DDX55-213ENST00000545042 FAM161AQ3B820 660 aa16.75■□□□□ 0.27
DDX55-213ENST00000545042 SMC1BQ8NDV3 1235 aa16.75■□□□□ 0.27
DDX55-213ENST00000545042 MPHOSPH8Q99549 860 aa16.75■□□□□ 0.27
DDX55-213ENST00000545042 POLLQ9UGP5 575 aa16.75■□□□□ 0.27
DDX55-213ENST00000545042 HACL1Q9UJ83 578 aa16.75■□□□□ 0.27
DDX55-213ENST00000545042 CHMP3Q9Y3E7 222 aa16.75■□□□□ 0.27
DDX55-213ENST00000545042 XDHP47989 1333 aa16.74■□□□□ 0.27
DDX55-213ENST00000545042 ANKRD18BA2A2Z9 1011 aa16.74■□□□□ 0.27
DDX55-213ENST00000545042 G3V3G9 751 aa16.74■□□□□ 0.27
DDX55-213ENST00000545042 LMOD1P29536 600 aaPredicted RBP16.74■□□□□ 0.27
DDX55-213ENST00000545042 BRPF1P55201 1214 aaPredicted RBP16.74■□□□□ 0.27
DDX55-213ENST00000545042 DCAF8Q5TAQ9 597 aa16.74■□□□□ 0.27
DDX55-213ENST00000545042 TBC1D16Q8TBP0 767 aa16.74■□□□□ 0.27
DDX55-213ENST00000545042 ZC3H12CQ9C0D7 883 aaKnown RBP16.74■□□□□ 0.27
DDX55-213ENST00000545042 COL4A1P02462 1669 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms