RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 LTV1Q96GA3 475 aaPredicted RBP6.33□□□□□ -1.4
USP28-213ENST00000544967 USP25Q9UHP3 1055 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 ATP10DQ9P241 1426 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 HMOX1P09601 288 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 PTF1AQ7RTS3 328 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 CALCOCO1Q9P1Z2 691 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 RAD50Q92878 1312 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 NOLC1Q14978 699 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP28-213ENST00000544967 C1orf141Q5JVX7 400 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 DZIP1LQ8IYY4 767 aaKnown RBP6.32□□□□□ -1.4
USP28-213ENST00000544967 FBXW7Q969H0 707 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 IL17RAQ96F46 866 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 FAM53CQ9NYF3 392 aa6.32□□□□□ -1.4
USP28-213ENST00000544967 MORC2Q9Y6X9 1032 aaPredicted RBP6.32□□□□□ -1.4
USP28-213ENST00000544967 TNRC6CQ9HCJ0 1690 aaKnown RBP6.32□□□□□ -1.4
USP28-213ENST00000544967 KCNQ2O43526 872 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 SSFA2P28290 1259 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 CHAF1AQ13111 956 aaPredicted RBP6.31□□□□□ -1.4
USP28-213ENST00000544967 LGR6Q9HBX8 967 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 CGNQ9P2M7 1197 aaKnown RBP6.31□□□□□ -1.4
USP28-213ENST00000544967 MARCH6O60337 910 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 PRIM1P49642 420 aaKnown RBP6.31□□□□□ -1.4
USP28-213ENST00000544967 SPTY2D1Q68D10 685 aaPredicted RBP6.31□□□□□ -1.4
USP28-213ENST00000544967 LRRC4BQ9NT99 713 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 MCM2P49736 904 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 SGIP1Q9BQI5 828 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 TSPY26PQ9H489 355 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 BCL2L12Q9HB09 334 aa6.31□□□□□ -1.4
USP28-213ENST00000544967 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP28-213ENST00000544967 BAG6P46379 1132 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 TAF7Q15545 349 aaPredicted RBP6.3□□□□□ -1.4
USP28-213ENST00000544967 ATP2B3Q16720 1220 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 SLFNL1Q499Z3 407 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 ZNF790Q6PG37 636 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 TMEM87AQ8NBN3 555 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 TIGD1Q96MW7 591 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 TMOD3Q9NYL9 352 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 EPB41L2O43491 1005 aaKnown RBP6.3□□□□□ -1.4
USP28-213ENST00000544967 EIF4A1P60842 406 aaKnown RBP6.3□□□□□ -1.4
USP28-213ENST00000544967 C10orf71Q711Q0 1435 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 ARAP2Q8WZ64 1704 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 EFCC1Q9HA90 598 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 DDX41Q9UJV9 622 aaKnown RBP6.3□□□□□ -1.4
USP28-213ENST00000544967 TRIM37O94972 964 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 RLBP1P12271 317 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 TXNRD1Q16881 649 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 CAVIN1Q6NZI2 390 aaKnown RBP6.3□□□□□ -1.4
USP28-213ENST00000544967 INTS5Q6P9B9 1019 aaKnown RBP6.3□□□□□ -1.4
USP28-213ENST00000544967 TEX13AQ9BXU3 409 aaPredicted RBP6.3□□□□□ -1.4
USP28-213ENST00000544967 IGSF5Q9NSI5 407 aa6.3□□□□□ -1.4
USP28-213ENST00000544967 PSME4Q14997 1843 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 U2SURPO15042 1029 aaKnown RBP6.29□□□□□ -1.4
USP28-213ENST00000544967 CDC45O75419 566 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 CYP19A1P11511 503 aaPredicted RBP6.29□□□□□ -1.4
USP28-213ENST00000544967 ITPK1Q13572 414 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 ALDH1L2Q3SY69 923 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 EVI5LQ96CN4 794 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 ZBTB40Q9NUA8 1239 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 COL15A1P39059 1388 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 LOC102724428A0A0B4J2F2 783 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 SLC4A2P04920 1241 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 SIK1P57059 783 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 RNF20Q5VTR2 975 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 CTR9Q6PD62 1173 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 CHD1LQ86WJ1 897 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 LINC00116Q8NCU8 138 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 DICER1Q9UPY3 1922 aaKnown RBP6.29□□□□□ -1.4
USP28-213ENST00000544967 SLFN14P0C7P3 912 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 MPRIPQ6WCQ1 1025 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 GPT2Q8TD30 523 aa6.29□□□□□ -1.4
USP28-213ENST00000544967 INTS4Q96HW7 963 aaKnown RBP6.29□□□□□ -1.4
USP28-213ENST00000544967 PNPLA7Q6ZV29 1317 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 SENP3-EIF4A1A0A087X0R7 540 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 IPO8O15397 1037 aaKnown RBP6.28□□□□□ -1.4
USP28-213ENST00000544967 GIGYF1O75420 1035 aaPredicted RBP6.28□□□□□ -1.4
USP28-213ENST00000544967 CBX1P83916 185 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 PDIA6Q15084 440 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 SPATA32Q96LK8 384 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 CTNNA3Q9UI47 895 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 ASAP1Q9ULH1 1129 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 PPME1Q9Y570 386 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 FER1L6Q2WGJ9 1857 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 CABP4P57796 275 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 MCTP1Q6DN14 999 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 NFATC2IPQ8NCF5 419 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 KIAA1524Q8TCG1 905 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 ARHGAP45Q92619 1136 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 PAXBP1Q9Y5B6 917 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 DUOX1Q9NRD9 1551 aa6.28□□□□□ -1.4
USP28-213ENST00000544967 SMTNL1A8MU46 457 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 GOLGA6L6A8MZA4 724 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 MMP14P50281 582 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 GNAI1P63096 354 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 IRX5P78411 483 aaPredicted RBP6.27□□□□□ -1.41
USP28-213ENST00000544967 ZNF827Q17R98 1081 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 SLC16A10Q8TF71 515 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 TMEM63CQ9P1W3 806 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 SUGT1Q9Y2Z0 365 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 SNED1Q8TER0 1413 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 ST18O60284 1047 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms