RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 GDPD2Q9HCC8 539 aa21.58■■□□□ 1.05
VIM-209ENST00000544301 STRN4Q9NRL3 753 aa21.58■■□□□ 1.05
VIM-209ENST00000544301 ZNF335Q9H4Z2 1342 aaPredicted RBP21.58■■□□□ 1.05
VIM-209ENST00000544301 TAF5LO75529 589 aa21.58■■□□□ 1.04
VIM-209ENST00000544301 ME3Q16798 604 aa21.58■■□□□ 1.04
VIM-209ENST00000544301 HAUS7Q99871 368 aa21.58■■□□□ 1.04
VIM-209ENST00000544301 CHMP3Q9Y3E7 222 aa21.58■■□□□ 1.04
VIM-209ENST00000544301 TJP1Q07157 1748 aa21.58■■□□□ 1.04
VIM-209ENST00000544301 RFX7Q2KHR2 1363 aa21.57■■□□□ 1.04
VIM-209ENST00000544301 SYCE3A1L190 88 aa21.57■■□□□ 1.04
VIM-209ENST00000544301 GADD45BO75293 160 aaPredicted RBP21.57■■□□□ 1.04
VIM-209ENST00000544301 GJB2P29033 226 aa21.57■■□□□ 1.04
VIM-209ENST00000544301 ST3GAL1Q11201 340 aa21.57■■□□□ 1.04
VIM-209ENST00000544301 COL9A3Q14050 684 aaPredicted RBP21.57■■□□□ 1.04
VIM-209ENST00000544301 TRIM44Q96DX7 344 aaPredicted RBP21.57■■□□□ 1.04
VIM-209ENST00000544301 ZBTB3Q9H5J0 574 aa21.57■■□□□ 1.04
VIM-209ENST00000544301 NDUFB9Q9Y6M9 179 aa21.57■■□□□ 1.04
VIM-209ENST00000544301 ATG9AQ7Z3C6 839 aa21.56■■□□□ 1.04
VIM-209ENST00000544301 TMEM87AQ8NBN3 555 aa21.56■■□□□ 1.04
VIM-209ENST00000544301 CCDC191Q8NCU4 936 aa21.56■■□□□ 1.04
VIM-209ENST00000544301 ANP32BQ92688 251 aaKnown RBP21.56■■□□□ 1.04
VIM-209ENST00000544301 EVA1CP58658 441 aa21.56■■□□□ 1.04
VIM-209ENST00000544301 DNAJC2Q99543 621 aaKnown RBP21.56■■□□□ 1.04
VIM-209ENST00000544301 HMG20BQ9P0W2 317 aa21.56■■□□□ 1.04
VIM-209ENST00000544301 TPCN1Q9ULQ1 816 aa21.56■■□□□ 1.04
VIM-209ENST00000544301 TAF6LQ9Y6J9 622 aa21.56■■□□□ 1.04
VIM-209ENST00000544301 F13A1P00488 732 aa21.55■■□□□ 1.04
VIM-209ENST00000544301 TSGA10IPQ3SY00 556 aa21.55■■□□□ 1.04
VIM-209ENST00000544301 USPL1Q5W0Q7 1092 aa21.55■■□□□ 1.04
VIM-209ENST00000544301 BLOC1S2Q6QNY1 142 aa21.55■■□□□ 1.04
VIM-209ENST00000544301 ALDH8A1Q9H2A2 487 aaPredicted RBP21.55■■□□□ 1.04
VIM-209ENST00000544301 TCHHQ07283 1943 aa21.54■■□□□ 1.04
VIM-209ENST00000544301 RPS6KB1P23443 525 aa21.54■■□□□ 1.04
VIM-209ENST00000544301 NECAB1Q8N987 351 aa21.54■■□□□ 1.04
VIM-209ENST00000544301 CNPY2Q9Y2B0 182 aa21.54■■□□□ 1.04
VIM-209ENST00000544301 ZNF609O15014 1411 aa21.54■■□□□ 1.04
VIM-209ENST00000544301 ESPNB1AK53 854 aa21.53■■□□□ 1.04
VIM-209ENST00000544301 CLCN1P35523 988 aa21.53■■□□□ 1.04
VIM-209ENST00000544301 GPR108Q9NPR9 543 aa21.53■■□□□ 1.04
VIM-209ENST00000544301 SYAP1Q96A49 352 aaPredicted RBP21.53■■□□□ 1.04
VIM-209ENST00000544301 MTMR6Q9Y217 621 aa21.53■■□□□ 1.04
VIM-209ENST00000544301 TOGARAM1Q9Y4F4 1720 aa21.53■■□□□ 1.04
VIM-209ENST00000544301 DTNBO60941 627 aa21.52■■□□□ 1.04
VIM-209ENST00000544301 CHGBP05060 677 aa21.52■■□□□ 1.04
VIM-209ENST00000544301 IL15P40933 162 aaPredicted RBP21.52■■□□□ 1.04
VIM-209ENST00000544301 ANKRD1Q15327 319 aa21.52■■□□□ 1.04
VIM-209ENST00000544301 DDX46Q7L014 1031 aaKnown RBP21.52■■□□□ 1.04
VIM-209ENST00000544301 ATP6V1DQ9Y5K8 247 aa21.52■■□□□ 1.04
VIM-209ENST00000544301 MCMDC2Q4G0Z9 681 aa21.51■■□□□ 1.03
VIM-209ENST00000544301 KBTBD3Q8NAB2 608 aa21.51■■□□□ 1.03
VIM-209ENST00000544301 TCEANC2Q96MN5 208 aa21.51■■□□□ 1.03
VIM-209ENST00000544301 NEUROD6Q96NK8 337 aa21.51■■□□□ 1.03
VIM-209ENST00000544301 TMOD3Q9NYL9 352 aa21.51■■□□□ 1.03
VIM-209ENST00000544301 TOB2Q14106 344 aaPredicted RBP21.5■■□□□ 1.03
VIM-209ENST00000544301 CCDC129Q6ZRS4 1044 aa21.5■■□□□ 1.03
VIM-209ENST00000544301 SEC62Q99442 399 aaKnown RBP21.5■■□□□ 1.03
VIM-209ENST00000544301 ISCA1Q9BUE6 129 aa21.5■■□□□ 1.03
VIM-209ENST00000544301 CCDC9Q9Y3X0 531 aaKnown RBP21.5■■□□□ 1.03
VIM-209ENST00000544301 EYA2O00167 538 aa21.5■■□□□ 1.03
VIM-209ENST00000544301 TIMM10P62072 90 aa21.5■■□□□ 1.03
VIM-209ENST00000544301 LRRC24Q50LG9 513 aa21.5■■□□□ 1.03
VIM-209ENST00000544301 ZNF594Q96JF6 807 aaPredicted RBP21.5■■□□□ 1.03
VIM-209ENST00000544301 ATG3Q9NT62 314 aa21.5■■□□□ 1.03
VIM-209ENST00000544301 KRT32Q14532 448 aa21.49■■□□□ 1.03
VIM-209ENST00000544301 U3KPZ7 1027 aaPredicted RBP21.49■■□□□ 1.03
VIM-209ENST00000544301 CIAO1O76071 339 aa21.49■■□□□ 1.03
VIM-209ENST00000544301 NHSL1Q5SYE7 1610 aa21.48■■□□□ 1.03
VIM-209ENST00000544301 PALLDQ8WX93 1383 aa21.48■■□□□ 1.03
VIM-209ENST00000544301 TCIRG1Q13488 830 aa21.48■■□□□ 1.03
VIM-209ENST00000544301 SH3TC1Q8TE82 1336 aa21.48■■□□□ 1.03
VIM-209ENST00000544301 PAG1Q9NWQ8 432 aa21.47■■□□□ 1.03
VIM-209ENST00000544301 GOLIM4O00461 696 aa21.47■■□□□ 1.03
VIM-209ENST00000544301 PHF14O94880 888 aa21.47■■□□□ 1.03
VIM-209ENST00000544301 UBE2HP62256 183 aa21.47■■□□□ 1.03
VIM-209ENST00000544301 PIGBQ92521 554 aa21.47■■□□□ 1.03
VIM-209ENST00000544301 ASAP1Q9ULH1 1129 aa21.47■■□□□ 1.03
VIM-209ENST00000544301 VPS37CA5D8V6 355 aaPredicted RBP21.46■■□□□ 1.03
VIM-209ENST00000544301 PDLIM2Q96JY6 352 aa21.46■■□□□ 1.03
VIM-209ENST00000544301 PUS3Q9BZE2 481 aaKnown RBP21.46■■□□□ 1.03
VIM-209ENST00000544301 TSPY26PQ9H489 355 aa21.46■■□□□ 1.03
VIM-209ENST00000544301 DNM1Q05193 864 aaKnown RBP21.46■■□□□ 1.03
VIM-209ENST00000544301 TRIM28Q13263 835 aaKnown RBP21.46■■□□□ 1.03
VIM-209ENST00000544301 LARP1BQ659C4 914 aaKnown RBP21.46■■□□□ 1.03
VIM-209ENST00000544301 VSIG10Q8N0Z9 540 aa21.46■■□□□ 1.03
VIM-209ENST00000544301 NEK1Q96PY6 1258 aa21.46■■□□□ 1.03
VIM-209ENST00000544301 TEX13AQ9BXU3 409 aaPredicted RBP21.46■■□□□ 1.03
VIM-209ENST00000544301 FIBPO43427 364 aa21.45■■□□□ 1.02
VIM-209ENST00000544301 CYP21A2P08686 494 aa21.45■■□□□ 1.02
VIM-209ENST00000544301 PDIA4P13667 645 aaKnown RBP21.45■■□□□ 1.02
VIM-209ENST00000544301 TICAM2Q86XR7 235 aa21.45■■□□□ 1.02
VIM-209ENST00000544301 DNAJC10Q8IXB1 793 aa21.45■■□□□ 1.02
VIM-209ENST00000544301 ZNF330Q9Y3S2 320 aaPredicted RBP21.45■■□□□ 1.02
VIM-209ENST00000544301 A0A1B0GUL7 405 aa21.44■■□□□ 1.02
VIM-209ENST00000544301 HELLSQ9NRZ9 838 aa21.44■■□□□ 1.02
VIM-209ENST00000544301 CCDC183Q5T5S1 534 aa21.44■■□□□ 1.02
VIM-209ENST00000544301 PDCP20941 246 aa21.43■■□□□ 1.02
VIM-209ENST00000544301 CSPP1Q1MSJ5 1256 aa21.43■■□□□ 1.02
VIM-209ENST00000544301 KIF6Q6ZMV9 814 aa21.43■■□□□ 1.02
VIM-209ENST00000544301 BTG4Q9NY30 223 aa21.43■■□□□ 1.02
VIM-209ENST00000544301 KDM4FA0A1W2PPD8 638 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms