RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TMOD3Q9NYL9 352 aa11.83□□□□□ -0.51
SS18-205ENST00000542420 ARAP2Q8WZ64 1704 aa11.83□□□□□ -0.52
SS18-205ENST00000542420 CDHR2Q9BYE9 1310 aa11.83□□□□□ -0.52
SS18-205ENST00000542420 LAMB2P55268 1798 aa11.83□□□□□ -0.52
SS18-205ENST00000542420 NMIQ13287 307 aaPredicted RBP11.83□□□□□ -0.52
SS18-205ENST00000542420 HSP90AB3PQ58FF7 597 aa11.83□□□□□ -0.52
SS18-205ENST00000542420 FSD1Q9BTV5 496 aa11.83□□□□□ -0.52
SS18-205ENST00000542420 CCDC8Q9H0W5 538 aaPredicted RBP11.83□□□□□ -0.52
SS18-205ENST00000542420 LAMA4Q16363 1823 aa11.83□□□□□ -0.52
SS18-205ENST00000542420 AK2P54819 239 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 HSP90AA2PQ14568 343 aaPredicted RBP11.82□□□□□ -0.52
SS18-205ENST00000542420 LRRFIP1Q32MZ4 808 aaKnown RBP11.82□□□□□ -0.52
SS18-205ENST00000542420 CREB3L3Q68CJ9 461 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 RASEFQ8IZ41 740 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 PDRG1Q9NUG6 133 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 DBNLQ9UJU6 430 aaKnown RBP11.82□□□□□ -0.52
SS18-205ENST00000542420 RBM8AQ9Y5S9 174 aaKnown RBP11.82□□□□□ -0.52
SS18-205ENST00000542420 TCHHQ07283 1943 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 BCL9O00512 1426 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 DOT1LQ8TEK3 1739 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 PCCAP05165 728 aaPredicted RBP11.82□□□□□ -0.52
SS18-205ENST00000542420 TCIRG1Q13488 830 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 CSPP1Q1MSJ5 1256 aa11.82□□□□□ -0.52
SS18-205ENST00000542420 SYAP1Q96A49 352 aaPredicted RBP11.82□□□□□ -0.52
SS18-205ENST00000542420 UPF3BQ9BZI7 483 aaKnown RBP11.82□□□□□ -0.52
SS18-205ENST00000542420 U3KPZ7 1027 aaPredicted RBP11.82□□□□□ -0.52
SS18-205ENST00000542420 STARD3NLO95772 234 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 PTH1RQ03431 593 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 TFCP2Q12800 502 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 LMBR1LQ6UX01 489 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 HELLSQ9NRZ9 838 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 PHLPP1O60346 1717 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 LRP5O75197 1615 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 EYA2O00167 538 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 SLC27A2O14975 620 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 CASTP20810 708 aaKnown RBP11.81□□□□□ -0.52
SS18-205ENST00000542420 CHMP4CQ96CF2 233 aa11.81□□□□□ -0.52
SS18-205ENST00000542420 GZF1Q9H116 711 aaPredicted RBP11.81□□□□□ -0.52
SS18-205ENST00000542420 TLR7Q9NYK1 1049 aaKnown RBP11.81□□□□□ -0.52
SS18-205ENST00000542420 PKP1Q13835 747 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 PRPF40BQ6NWY9 871 aaKnown RBP11.8□□□□□ -0.52
SS18-205ENST00000542420 KIF6Q6ZMV9 814 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 ATG9AQ7Z3C6 839 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 KBTBD3Q8NAB2 608 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 JAKMIP1Q96N16 626 aaKnown RBP11.8□□□□□ -0.52
SS18-205ENST00000542420 SIL1Q9H173 461 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 BOLA2Q9H3K6 86 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 AKAP2Q9Y2D5 859 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 TTLL7Q6ZT98 887 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 SMC3Q9UQE7 1217 aa11.8□□□□□ -0.52
SS18-205ENST00000542420 THRAP3Q9Y2W1 955 aaKnown RBP11.8□□□□□ -0.52
SS18-205ENST00000542420 A0A0D9SFI3 127 aa11.79□□□□□ -0.52
SS18-205ENST00000542420 ATP5J2-PTCD1G3V325 749 aa11.79□□□□□ -0.52
SS18-205ENST00000542420 PTCD1O75127 700 aaKnown RBP11.79□□□□□ -0.52
SS18-205ENST00000542420 TAF5LO75529 589 aa11.79□□□□□ -0.52
SS18-205ENST00000542420 HMGB1P09429 215 aaKnown RBP11.79□□□□□ -0.52
SS18-205ENST00000542420 ZSCAN22P10073 491 aaPredicted RBP11.79□□□□□ -0.52
SS18-205ENST00000542420 PDCP20941 246 aa11.79□□□□□ -0.52
SS18-205ENST00000542420 MCMDC2Q4G0Z9 681 aa11.79□□□□□ -0.52
SS18-205ENST00000542420 AK7Q96M32 723 aa11.79□□□□□ -0.52
SS18-205ENST00000542420 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.79□□□□□ -0.52
SS18-205ENST00000542420 MAP3K15Q6ZN16 1313 aa11.79□□□□□ -0.52
SS18-205ENST00000542420 DDX60Q8IY21 1712 aaKnown RBP11.79□□□□□ -0.52
SS18-205ENST00000542420 MYH15Q9Y2K3 1946 aa11.79□□□□□ -0.52
SS18-205ENST00000542420 PHF14O94880 888 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 A1BGP04217 495 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 CSF1RP07333 972 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 RPS6KB1P23443 525 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 KCNJ4P48050 445 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 BLOC1S2Q6QNY1 142 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 FAM227BQ96M60 508 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 DSCC1Q9BVC3 393 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 ERVV-1B6SEH8 477 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 NCLP19338 710 aaKnown RBP11.78□□□□□ -0.52
SS18-205ENST00000542420 CCDC173Q0VFZ6 552 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 GIGYF2Q6Y7W6 1299 aaKnown RBP11.78□□□□□ -0.52
SS18-205ENST00000542420 ZBTB38Q8NAP3 1195 aaPredicted RBP11.78□□□□□ -0.52
SS18-205ENST00000542420 PPP1R9BQ96SB3 815 aa11.78□□□□□ -0.52
SS18-205ENST00000542420 STX6O43752 255 aa11.77□□□□□ -0.52
SS18-205ENST00000542420 PRPF40AO75400 957 aaKnown RBP11.77□□□□□ -0.52
SS18-205ENST00000542420 LETM1O95202 739 aaPredicted RBP11.77□□□□□ -0.52
SS18-205ENST00000542420 ZSCAN23Q3MJ62 389 aa11.77□□□□□ -0.52
SS18-205ENST00000542420 DDX54Q8TDD1 881 aaKnown RBP11.77□□□□□ -0.52
SS18-205ENST00000542420 ANP32BQ92688 251 aaKnown RBP11.77□□□□□ -0.52
SS18-205ENST00000542420 ZNF512BQ96KM6 892 aaPredicted RBP11.77□□□□□ -0.52
SS18-205ENST00000542420 DBNDD2Q9BQY9 259 aa11.77□□□□□ -0.52
SS18-205ENST00000542420 STRN4Q9NRL3 753 aa11.77□□□□□ -0.52
SS18-205ENST00000542420 ZFYP08048 801 aaPredicted RBP11.77□□□□□ -0.53
SS18-205ENST00000542420 KLHDC4Q8TBB5 520 aa11.77□□□□□ -0.53
SS18-205ENST00000542420 AKAP11Q9UKA4 1901 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 LTBP4Q8N2S1 1624 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 F13A1P00488 732 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 LRSAM1Q6UWE0 723 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 GAS2L3Q86XJ1 694 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 GPT2Q8TD30 523 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 PIGBQ92521 554 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 BCORQ6W2J9 1755 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 CLCN1P35523 988 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 ADCK5Q3MIX3 580 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 HS1BP3Q53T59 392 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms