RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 AIMP1Q12904 312 aaKnown RBP17.76■□□□□ 0.43
SS18-204ENST00000539244 GRAPQ13588 217 aa17.76■□□□□ 0.43
SS18-204ENST00000539244 DDX46Q7L014 1031 aaKnown RBP17.76■□□□□ 0.43
SS18-204ENST00000539244 TMC4Q7Z404 712 aa17.76■□□□□ 0.43
SS18-204ENST00000539244 GRAPLQ8TC17 118 aaPredicted RBP17.76■□□□□ 0.43
SS18-204ENST00000539244 PGAP2Q9UHJ9 254 aa17.76■□□□□ 0.43
SS18-204ENST00000539244 TLL2Q9Y6L7 1015 aa17.76■□□□□ 0.43
SS18-204ENST00000539244 DUOX1Q9NRD9 1551 aa17.75■□□□□ 0.43
SS18-204ENST00000539244 NECTIN2Q92692 538 aa17.75■□□□□ 0.43
SS18-204ENST00000539244 CAPNS2Q96L46 248 aa17.75■□□□□ 0.43
SS18-204ENST00000539244 TRIM35Q9UPQ4 493 aa17.75■□□□□ 0.43
SS18-204ENST00000539244 DDX60Q8IY21 1712 aaKnown RBP17.75■□□□□ 0.43
SS18-204ENST00000539244 MYBBP1AQ9BQG0 1328 aaKnown RBP17.74■□□□□ 0.43
SS18-204ENST00000539244 TAF1P21675 1872 aa17.74■□□□□ 0.43
SS18-204ENST00000539244 TRAF5O00463 557 aa17.74■□□□□ 0.43
SS18-204ENST00000539244 GMPSP49915 693 aaPredicted RBP17.74■□□□□ 0.43
SS18-204ENST00000539244 KRT24Q2M2I5 525 aa17.74■□□□□ 0.43
SS18-204ENST00000539244 CIAPIN1Q6FI81 312 aa17.74■□□□□ 0.43
SS18-204ENST00000539244 TNIP1Q15025 636 aa17.73■□□□□ 0.43
SS18-204ENST00000539244 PLBD2Q8NHP8 589 aa17.73■□□□□ 0.43
SS18-204ENST00000539244 ZC3H15Q8WU90 426 aaKnown RBP17.73■□□□□ 0.43
SS18-204ENST00000539244 RUNDC1Q96C34 613 aa17.73■□□□□ 0.43
SS18-204ENST00000539244 ISCA1Q9BUE6 129 aa17.73■□□□□ 0.43
SS18-204ENST00000539244 CHPF2Q9P2E5 772 aa17.73■□□□□ 0.43
SS18-204ENST00000539244 SF3B3Q15393 1217 aaKnown RBP17.72■□□□□ 0.43
SS18-204ENST00000539244 HDGFL1Q5TGJ6 251 aa17.72■□□□□ 0.43
SS18-204ENST00000539244 CYP4F22Q6NT55 531 aa17.72■□□□□ 0.43
SS18-204ENST00000539244 CCDC146Q8IYE0 955 aa17.72■□□□□ 0.43
SS18-204ENST00000539244 HHIPL1Q96JK4 782 aa17.72■□□□□ 0.43
SS18-204ENST00000539244 GPR101Q96P66 508 aaPredicted RBP17.72■□□□□ 0.43
SS18-204ENST00000539244 YDJCA8MPS7 323 aa17.71■□□□□ 0.43
SS18-204ENST00000539244 MAP2K2P36507 400 aa17.71■□□□□ 0.43
SS18-204ENST00000539244 NEUROD2Q15784 382 aa17.71■□□□□ 0.43
SS18-204ENST00000539244 ANKRD13DQ6ZTN6 518 aa17.71■□□□□ 0.43
SS18-204ENST00000539244 SAPCD2Q86UD0 394 aa17.71■□□□□ 0.43
SS18-204ENST00000539244 DBF4Q9UBU7 674 aaPredicted RBP17.71■□□□□ 0.43
SS18-204ENST00000539244 RAD17O75943 681 aa17.7■□□□□ 0.42
SS18-204ENST00000539244 HIRAP54198 1017 aaPredicted RBP17.7■□□□□ 0.42
SS18-204ENST00000539244 BCL2L13Q9BXK5 485 aa17.7■□□□□ 0.42
SS18-204ENST00000539244 CELF2O95319 508 aaKnown RBP17.69■□□□□ 0.42
SS18-204ENST00000539244 TRIM28Q13263 835 aaKnown RBP17.69■□□□□ 0.42
SS18-204ENST00000539244 PAXIP1Q6ZW49 1069 aaPredicted RBP17.69■□□□□ 0.42
SS18-204ENST00000539244 CFAP44Q96MT7 982 aa17.69■□□□□ 0.42
SS18-204ENST00000539244 BEGAINQ9BUH8 593 aa17.69■□□□□ 0.42
SS18-204ENST00000539244 GLIS2Q9BZE0 524 aaPredicted RBP17.69■□□□□ 0.42
SS18-204ENST00000539244 CDC37L1Q7L3B6 337 aa17.68■□□□□ 0.42
SS18-204ENST00000539244 TRPM4Q8TD43 1214 aa17.68■□□□□ 0.42
SS18-204ENST00000539244 DPF2Q92785 391 aa17.68■□□□□ 0.42
SS18-204ENST00000539244 CELF1Q92879 486 aaKnown RBP17.68■□□□□ 0.42
SS18-204ENST00000539244 FAM89AQ96GI7 184 aa17.68■□□□□ 0.42
SS18-204ENST00000539244 HYPKQ9NX55 129 aa17.68■□□□□ 0.42
SS18-204ENST00000539244 CNOT7Q9UIV1 285 aaKnown RBP17.68■□□□□ 0.42
SS18-204ENST00000539244 LAS1LQ9Y4W2 734 aaKnown RBP17.68■□□□□ 0.42
SS18-204ENST00000539244 H7C1D1 291 aa17.67■□□□□ 0.42
SS18-204ENST00000539244 WDR43Q15061 677 aaKnown RBP eCLIP17.67■□□□□ 0.42
SS18-204ENST00000539244 ABHD8Q96I13 439 aa17.67■□□□□ 0.42
SS18-204ENST00000539244 COL4A1P02462 1669 aa17.67■□□□□ 0.42
SS18-204ENST00000539244 ATP5J2-PTCD1G3V325 749 aa17.66■□□□□ 0.42
SS18-204ENST00000539244 WASHC4Q2M389 1173 aa17.66■□□□□ 0.42
SS18-204ENST00000539244 DUSP27Q5VZP5 1158 aa17.66■□□□□ 0.42
SS18-204ENST00000539244 MICALL2Q8IY33 904 aa17.66■□□□□ 0.42
SS18-204ENST00000539244 NSFL1CQ9UNZ2 370 aaKnown RBP17.66■□□□□ 0.42
SS18-204ENST00000539244 ADAMTS8Q9UP79 889 aa17.66■□□□□ 0.42
SS18-204ENST00000539244 SHTN1A0MZ66 631 aa17.65■□□□□ 0.42
SS18-204ENST00000539244 CA12O43570 354 aa17.65■□□□□ 0.42
SS18-204ENST00000539244 AOC2O75106 756 aa17.65■□□□□ 0.42
SS18-204ENST00000539244 ZNF853P0CG23 659 aa17.65■□□□□ 0.42
SS18-204ENST00000539244 DDX10Q13206 875 aaKnown RBP17.65■□□□□ 0.42
SS18-204ENST00000539244 GRM1Q13255 1194 aa17.65■□□□□ 0.42
SS18-204ENST00000539244 MBIPQ9NS73 344 aa17.65■□□□□ 0.42
SS18-204ENST00000539244 POLLQ9UGP5 575 aa17.65■□□□□ 0.42
SS18-204ENST00000539244 PSMD14O00487 310 aa17.64■□□□□ 0.41
SS18-204ENST00000539244 IRS4O14654 1257 aaPredicted RBP17.64■□□□□ 0.41
SS18-204ENST00000539244 RPS12P25398 132 aaKnown RBP17.64■□□□□ 0.41
SS18-204ENST00000539244 BRPF1P55201 1214 aaPredicted RBP17.64■□□□□ 0.41
SS18-204ENST00000539244 ZNF428Q96B54 188 aa17.64■□□□□ 0.41
SS18-204ENST00000539244 DBNDD1Q9H9R9 158 aa17.64■□□□□ 0.41
SS18-204ENST00000539244 ZBTB12Q9Y330 459 aaPredicted RBP17.64■□□□□ 0.41
SS18-204ENST00000539244 RPS8P62241 208 aaKnown RBP17.63■□□□□ 0.41
SS18-204ENST00000539244 GPSM2P81274 684 aa17.63■□□□□ 0.41
SS18-204ENST00000539244 ZBTB38Q8NAP3 1195 aaPredicted RBP17.63■□□□□ 0.41
SS18-204ENST00000539244 EYA3Q99504 573 aa17.63■□□□□ 0.41
SS18-204ENST00000539244 PODXL2Q9NZ53 605 aa17.63■□□□□ 0.41
SS18-204ENST00000539244 RTL9Q8NET4 1388 aa17.63■□□□□ 0.41
SS18-204ENST00000539244 C6orf229H3BNL8 230 aa17.62■□□□□ 0.41
SS18-204ENST00000539244 POLR2AP24928 1970 aaKnown RBP17.62■□□□□ 0.41
SS18-204ENST00000539244 SCN9AQ15858 1988 aa17.62■□□□□ 0.41
SS18-204ENST00000539244 ECE2O60344 883 aa17.61■□□□□ 0.41
SS18-204ENST00000539244 HSP90B1P14625 803 aaKnown RBP17.61■□□□□ 0.41
SS18-204ENST00000539244 NOGQ13253 232 aa17.61■□□□□ 0.41
SS18-204ENST00000539244 RTL5Q5HYW3 569 aaPredicted RBP17.61■□□□□ 0.41
SS18-204ENST00000539244 SAMD7Q7Z3H4 446 aa17.61■□□□□ 0.41
SS18-204ENST00000539244 USP48Q86UV5 1035 aa17.61■□□□□ 0.41
SS18-204ENST00000539244 TBC1D16Q8TBP0 767 aa17.61■□□□□ 0.41
SS18-204ENST00000539244 ZNF408Q9H9D4 720 aa17.61■□□□□ 0.41
SS18-204ENST00000539244 IFT57Q9NWB7 429 aa17.61■□□□□ 0.41
SS18-204ENST00000539244 RIMBP2O15034 1052 aa17.6■□□□□ 0.41
SS18-204ENST00000539244 EGFRP00533 1210 aa17.6■□□□□ 0.41
SS18-204ENST00000539244 GOLGA2Q08379 1002 aa17.6■□□□□ 0.41
SS18-204ENST00000539244 RIC3Q7Z5B4 369 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms