RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	CNTNAP5	Q8WYK1	1306 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	OPLAH	O14841	1288 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	LILRB5	O75023	590 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	SASH3	O75995	380 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	GDF11	O95390	407 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	PLAUR	Q03405	335 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	GRIN2C	Q14957	1233 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	CAPN12	Q6ZSI9	719 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	DHX32	Q7L7V1	743 aa	Known RBP	5.3	□□□□□ -1.56
CD44-238	ENST00000534296	NLRP13	Q86W25	1043 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	GPR152	Q8TDT2	470 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296	DNAJB12	Q9NXW2	375 aa	Known RBP	5.3	□□□□□ -1.56
CD44-238	ENST00000534296	SLC6A14	Q9UN76	642 aa		5.3	□□□□□ -1.56
CD44-238	ENST00000534296		M0R082	166 aa		5.29	□□□□□ -1.56
CD44-238	ENST00000534296	USP5	P45974	858 aa		5.29	□□□□□ -1.56
CD44-238	ENST00000534296	NRL	P54845	237 aa		5.29	□□□□□ -1.56
CD44-238	ENST00000534296	SNRPN	P63162	240 aa	Known RBP	5.29	□□□□□ -1.56
CD44-238	ENST00000534296	GPLD1	P80108	840 aa		5.29	□□□□□ -1.56
CD44-238	ENST00000534296	PRRT3	Q5FWE3	981 aa		5.29	□□□□□ -1.56
CD44-238	ENST00000534296	TTC39B	Q5VTQ0	682 aa	Predicted RBP	5.29	□□□□□ -1.56
CD44-238	ENST00000534296	FAM35A	Q86V20	835 aa		5.29	□□□□□ -1.56
CD44-238	ENST00000534296	ZNF417	Q8TAU3	575 aa		5.29	□□□□□ -1.56
CD44-238	ENST00000534296	CCER1	Q8TC90	406 aa	Predicted RBP	5.29	□□□□□ -1.56
CD44-238	ENST00000534296	ZNF587	Q96SQ5	575 aa	Predicted RBP	5.29	□□□□□ -1.56
CD44-238	ENST00000534296	JPH1	Q9HDC5	661 aa	Predicted RBP	5.29	□□□□□ -1.56
CD44-238	ENST00000534296	EGFL7	Q9UHF1	273 aa		5.29	□□□□□ -1.56
CD44-238	ENST00000534296	RGS9	O75916	674 aa	Predicted RBP	5.28	□□□□□ -1.56
CD44-238	ENST00000534296	GHRH	P01286	108 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	MPST	P25325	297 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	TARS	P26639	723 aa	Known RBP	5.28	□□□□□ -1.56
CD44-238	ENST00000534296	SOX18	P35713	384 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	FKBP4	Q02790	459 aa	Known RBP eCLIP	5.28	□□□□□ -1.56
CD44-238	ENST00000534296	DNM1	Q05193	864 aa	Known RBP	5.28	□□□□□ -1.56
CD44-238	ENST00000534296	EHHADH	Q08426	723 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	PDE12	Q6L8Q7	609 aa	Known RBP	5.28	□□□□□ -1.56
CD44-238	ENST00000534296	ELMSAN1	Q6PJG2	1045 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	GLYCTK	Q8IVS8	523 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	MICALL1	Q8N3F8	863 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	SPACA7	Q96KW9	195 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	PRDM6	Q9NQX0	595 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	TLR7	Q9NYK1	1049 aa	Known RBP	5.28	□□□□□ -1.56
CD44-238	ENST00000534296	FRRS1L	Q9P0K9	344 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	USP20	Q9Y2K6	914 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	KCNMB2	Q9Y691	235 aa		5.28	□□□□□ -1.56
CD44-238	ENST00000534296	FAM177B	A6PVY3	158 aa		5.27	□□□□□ -1.57
CD44-238	ENST00000534296	ALB	P02768	609 aa		5.27	□□□□□ -1.57
CD44-238	ENST00000534296	CPB1	P15086	417 aa		5.27	□□□□□ -1.57
CD44-238	ENST00000534296	EIF2AK2	P19525	551 aa	Known RBP	5.27	□□□□□ -1.57
CD44-238	ENST00000534296	MZF1	P28698	734 aa	Predicted RBP	5.27	□□□□□ -1.57
CD44-238	ENST00000534296	EIF1AX	P47813	144 aa	Known RBP	5.27	□□□□□ -1.57
CD44-238	ENST00000534296	PSAPL1	Q6NUJ1	521 aa		5.27	□□□□□ -1.57
CD44-238	ENST00000534296	ZNF438	Q7Z4V0	828 aa		5.27	□□□□□ -1.57
CD44-238	ENST00000534296	TRPM4	Q8TD43	1214 aa		5.27	□□□□□ -1.57
CD44-238	ENST00000534296	EDEM1	Q92611	657 aa		5.27	□□□□□ -1.57
CD44-238	ENST00000534296	NUDT16	Q96DE0	195 aa	Known RBP	5.27	□□□□□ -1.57
CD44-238	ENST00000534296	MDFI	Q99750	246 aa		5.27	□□□□□ -1.57
CD44-238	ENST00000534296	CARNS1	A5YM72	827 aa		5.26	□□□□□ -1.57
CD44-238	ENST00000534296	PATL2	C9JE40	543 aa	Known RBP	5.26	□□□□□ -1.57
CD44-238	ENST00000534296		H3BRB1	525 aa		5.26	□□□□□ -1.57
CD44-238	ENST00000534296	GRN	P28799	593 aa	Known RBP	5.26	□□□□□ -1.57
CD44-238	ENST00000534296	SCNN1A	P37088	669 aa		5.26	□□□□□ -1.57
CD44-238	ENST00000534296	RAC1	P63000	192 aa		5.26	□□□□□ -1.57
CD44-238	ENST00000534296	HYAL2	Q12891	473 aa		5.26	□□□□□ -1.57
CD44-238	ENST00000534296	C8orf34	Q49A92	452 aa		5.26	□□□□□ -1.57
CD44-238	ENST00000534296	LINC00114	Q6XXX2	140 aa		5.26	□□□□□ -1.57
CD44-238	ENST00000534296	TUT1	Q9H6E5	874 aa	Known RBP	5.26	□□□□□ -1.57
CD44-238	ENST00000534296	ABI2	Q9NYB9	513 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-238	ENST00000534296	ZFAT	Q9P243	1243 aa		5.26	□□□□□ -1.57
CD44-238	ENST00000534296	MMP20	O60882	483 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	BRD1	O95696	1058 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	IGHA1	P01876	353 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	SPATA31C1	P0DKV0	1188 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	HOXD8	P13378	290 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-238	ENST00000534296	MLLT1	Q03111	559 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-238	ENST00000534296	TRIM28	Q13263	835 aa	Known RBP	5.25	□□□□□ -1.57
CD44-238	ENST00000534296	ZNF211	Q13398	564 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-238	ENST00000534296	TRIP4	Q15650	581 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-238	ENST00000534296	PHLDB3	Q6NSJ2	640 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	ATCAY	Q86WG3	371 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	DCAF11	Q8TEB1	546 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	NUDT8	Q8WV74	236 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	PMEPA1	Q969W9	287 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	DCAF5	Q96JK2	942 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	NSUN5	Q96P11	429 aa	Known RBP	5.25	□□□□□ -1.57
CD44-238	ENST00000534296	NACC1	Q96RE7	527 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	PLVAP	Q9BX97	442 aa		5.25	□□□□□ -1.57
CD44-238	ENST00000534296	LOC102724428	A0A0B4J2F2	783 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	ZBTB39	O15060	712 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	NDUFB5	O43674	189 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	ICMT	O60725	284 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	APBA3	O96018	575 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	PDGFA	P04085	211 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	NPR3	P17342	541 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	SIK1	P57059	783 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	MTMR3	Q13615	1198 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	TRAPPC3L	Q5T215	181 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	CACTIN-AS1	Q8N1I8	211 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	OR13H1	Q8NG92	308 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	ELP3	Q9H9T3	547 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	BRPF3	Q9ULD4	1205 aa		5.24	□□□□□ -1.57

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