RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SF3B2Q13435 895 aaKnown RBP25.85■■□□□ 1.73
VPS28-208ENST00000527797 ZNF827Q17R98 1081 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 TAF7LQ5H9L4 462 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 STAP2Q9UGK3 403 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 FBXO3Q9UK99 471 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 EYA2O00167 538 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 CIAO1O76071 339 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 ITGA6P23229 1130 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 ERFEQ4G0M1 354 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 NBPF5PQ86XG9 351 aaPredicted RBP25.85■■□□□ 1.73
VPS28-208ENST00000527797 ZNF594Q96JF6 807 aaPredicted RBP25.85■■□□□ 1.73
VPS28-208ENST00000527797 GREM2Q9H772 168 aa25.85■■□□□ 1.73
VPS28-208ENST00000527797 C4AP0C0L4 1744 aa25.84■■□□□ 1.73
VPS28-208ENST00000527797 IL15P40933 162 aaPredicted RBP25.84■■□□□ 1.73
VPS28-208ENST00000527797 TPTE2Q6XPS3 522 aa25.84■■□□□ 1.73
VPS28-208ENST00000527797 CAMKK2Q96RR4 588 aa25.84■■□□□ 1.73
VPS28-208ENST00000527797 RGPD3A6NKT7 1758 aaPredicted RBP25.84■■□□□ 1.73
VPS28-208ENST00000527797 RGPD4Q7Z3J3 1758 aa25.84■■□□□ 1.73
VPS28-208ENST00000527797 IFIT2P09913 472 aaKnown RBP25.83■■□□□ 1.73
VPS28-208ENST00000527797 GYS1P13807 737 aa25.83■■□□□ 1.73
VPS28-208ENST00000527797 ATG9AQ7Z3C6 839 aa25.83■■□□□ 1.73
VPS28-208ENST00000527797 FLAD1Q8NFF5 587 aa25.83■■□□□ 1.73
VPS28-208ENST00000527797 AOX1Q06278 1338 aa25.83■■□□□ 1.73
VPS28-208ENST00000527797 EN1Q05925 392 aaPredicted RBP25.82■■□□□ 1.72
VPS28-208ENST00000527797 TFCP2Q12800 502 aa25.82■■□□□ 1.72
VPS28-208ENST00000527797 SLC10A5Q5PT55 438 aa25.82■■□□□ 1.72
VPS28-208ENST00000527797 AACSQ86V21 672 aa25.82■■□□□ 1.72
VPS28-208ENST00000527797 GSPT1P15170 499 aaKnown RBP25.81■■□□□ 1.72
VPS28-208ENST00000527797 NFIXQ14938 502 aa25.81■■□□□ 1.72
VPS28-208ENST00000527797 EZH2Q15910 746 aaKnown RBP25.81■■□□□ 1.72
VPS28-208ENST00000527797 CCDC152Q4G0S7 254 aa25.81■■□□□ 1.72
VPS28-208ENST00000527797 CARMIL3Q8ND23 1372 aa25.81■■□□□ 1.72
VPS28-208ENST00000527797 LRRC24Q50LG9 513 aa25.81■■□□□ 1.72
VPS28-208ENST00000527797 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.81■■□□□ 1.72
VPS28-208ENST00000527797 BAG6P46379 1132 aa25.8■■□□□ 1.72
VPS28-208ENST00000527797 EAF2Q96CJ1 260 aaPredicted RBP25.8■■□□□ 1.72
VPS28-208ENST00000527797 RBM19Q9Y4C8 960 aaKnown RBP25.8■■□□□ 1.72
VPS28-208ENST00000527797 EP400Q96L91 3159 aa25.8■■□□□ 1.72
VPS28-208ENST00000527797 GPATCH3Q96I76 525 aa25.79■■□□□ 1.72
VPS28-208ENST00000527797 PUS3Q9BZE2 481 aaKnown RBP25.79■■□□□ 1.72
VPS28-208ENST00000527797 TTC41PQ6P2S7 1318 aa25.78■■□□□ 1.72
VPS28-208ENST00000527797 TSHZ3Q63HK5 1081 aa25.78■■□□□ 1.72
VPS28-208ENST00000527797 NPHP1O15259 732 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 MSH5O43196 834 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 TNNI3KQ59H18 835 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 LDHAL6AQ6ZMR3 332 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 COL23A1Q86Y22 540 aaPredicted RBP25.77■■□□□ 1.72
VPS28-208ENST00000527797 FPGT-TNNI3KV9GXZ4 949 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 RTL9Q8NET4 1388 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 SF3B3Q15393 1217 aaKnown RBP25.77■■□□□ 1.72
VPS28-208ENST00000527797 CCDC8Q9H0W5 538 aaPredicted RBP25.77■■□□□ 1.72
VPS28-208ENST00000527797 GPR108Q9NPR9 543 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 CEP126Q9P2H0 1117 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 COL24A1Q17RW2 1714 aa25.77■■□□□ 1.72
VPS28-208ENST00000527797 TM4SF1P30408 202 aa25.76■■□□□ 1.71
VPS28-208ENST00000527797 ECHDC1Q9NTX5 307 aa25.76■■□□□ 1.71
VPS28-208ENST00000527797 ERC2O15083 957 aa25.75■■□□□ 1.71
VPS28-208ENST00000527797 NLRP3Q96P20 1036 aa25.75■■□□□ 1.71
VPS28-208ENST00000527797 CNNM1Q9NRU3 951 aa25.75■■□□□ 1.71
VPS28-208ENST00000527797 MYH3P11055 1940 aa25.75■■□□□ 1.71
VPS28-208ENST00000527797 DDX60Q8IY21 1712 aaKnown RBP25.75■■□□□ 1.71
VPS28-208ENST00000527797 ABCC12Q96J65 1359 aa25.75■■□□□ 1.71
VPS28-208ENST00000527797 LAMB2P55268 1798 aa25.75■■□□□ 1.71
VPS28-208ENST00000527797 SDSP20132 328 aa25.74■■□□□ 1.71
VPS28-208ENST00000527797 STK32BQ9NY57 414 aa25.74■■□□□ 1.71
VPS28-208ENST00000527797 RIPOR2Q9Y4F9 1068 aa25.74■■□□□ 1.71
VPS28-208ENST00000527797 NLGN1Q8N2Q7 840 aa25.74■■□□□ 1.71
VPS28-208ENST00000527797 CNBD1Q8NA66 436 aa25.74■■□□□ 1.71
VPS28-208ENST00000527797 PI4K2BQ8TCG2 481 aa25.74■■□□□ 1.71
VPS28-208ENST00000527797 SEC31BQ9NQW1 1179 aa25.74■■□□□ 1.71
VPS28-208ENST00000527797 CDC45O75419 566 aa25.73■■□□□ 1.71
VPS28-208ENST00000527797 GLRX3O76003 335 aaKnown RBP25.73■■□□□ 1.71
VPS28-208ENST00000527797 PNPLA7Q6ZV29 1317 aa25.72■■□□□ 1.71
VPS28-208ENST00000527797 SERPINB2P05120 415 aa25.72■■□□□ 1.71
VPS28-208ENST00000527797 IGHMBP2P38935 993 aaKnown RBP25.72■■□□□ 1.71
VPS28-208ENST00000527797 SLC15A2Q16348 729 aa25.72■■□□□ 1.71
VPS28-208ENST00000527797 C3orf67Q6ZVT6 689 aa25.72■■□□□ 1.71
VPS28-208ENST00000527797 CDC5LQ99459 802 aaKnown RBP25.72■■□□□ 1.71
VPS28-208ENST00000527797 MPHOSPH8Q99549 860 aa25.72■■□□□ 1.71
VPS28-208ENST00000527797 TLR7Q9NYK1 1049 aaKnown RBP25.72■■□□□ 1.71
VPS28-208ENST00000527797 AKAP2Q9Y2D5 859 aa25.72■■□□□ 1.71
VPS28-208ENST00000527797 METTL24Q5JXM2 366 aa25.71■■□□□ 1.71
VPS28-208ENST00000527797 CCDC125Q86Z20 511 aa25.71■■□□□ 1.71
VPS28-208ENST00000527797 DEFB132Q7Z7B7 95 aa25.7■■□□□ 1.71
VPS28-208ENST00000527797 CCDC24Q8N4L8 307 aa25.7■■□□□ 1.71
VPS28-208ENST00000527797 TRIM6-TRIM34B2RNG4 842 aa25.7■■□□□ 1.7
VPS28-208ENST00000527797 NEUROD6Q96NK8 337 aa25.7■■□□□ 1.7
VPS28-208ENST00000527797 ANO8Q9HCE9 1232 aaPredicted RBP25.7■■□□□ 1.7
VPS28-208ENST00000527797 DBNLQ9UJU6 430 aaKnown RBP25.7■■□□□ 1.7
VPS28-208ENST00000527797 PRR5LQ6MZQ0 368 aa25.69■■□□□ 1.7
VPS28-208ENST00000527797 MROH5Q6ZUA9 1318 aa25.69■■□□□ 1.7
VPS28-208ENST00000527797 POLRMTO00411 1230 aaKnown RBP25.68■■□□□ 1.7
VPS28-208ENST00000527797 SEC24BO95487 1268 aa25.68■■□□□ 1.7
VPS28-208ENST00000527797 ST5P78524 1137 aa25.68■■□□□ 1.7
VPS28-208ENST00000527797 DDR1Q08345 913 aa25.68■■□□□ 1.7
VPS28-208ENST00000527797 TBC1D9Q6ZT07 1266 aa25.68■■□□□ 1.7
VPS28-208ENST00000527797 RILPL2Q969X0 211 aa25.68■■□□□ 1.7
VPS28-208ENST00000527797 DBNDD2Q9BQY9 259 aa25.68■■□□□ 1.7
VPS28-208ENST00000527797 A0A1B0GUL7 405 aa25.67■■□□□ 1.7
VPS28-208ENST00000527797 TIMM10P62072 90 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms