RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ZIC5Q96T25 663 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PPP1R16BQ96T49 567 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 ARID3AQ99856 593 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 DBNDD2Q9BQY9 259 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 OSBPL1AQ9BXW6 950 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 KCNF1Q9H3M0 494 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 VRTNQ9H8Y1 702 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 ETNK1Q9HBU6 452 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 SCHIP1Q9P0W5 487 aaPredicted RBP0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 SERTAD1Q9UHV2 236 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 LEMD3Q9Y2U8 911 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 RNF114Q9Y508 228 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PPME1Q9Y570 386 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 COL17A1Q9UMD9 1497 aaPredicted RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 A6NJR5 290 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 USP17L5A8MUK1 530 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 SHISA8B8ZZ34 492 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 EML1O00423 815 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 ATP9BO43861 1147 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 IGLV1-40P01703 118 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 CYP11A1P05108 521 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 SLFN14P0C7P3 912 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 EDN3P14138 238 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 CPB1P15086 417 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 NFKB1P19838 968 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 FSTP19883 344 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 LMNB1P20700 586 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 IGFBP4P22692 258 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 CDC27P30260 824 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 SNRPNP63162 240 aaKnown RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 PIP4K2BP78356 416 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 GPLD1P80108 840 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 CTBSQ01459 385 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 FZD5Q13467 585 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 ADGRE1Q14246 886 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 MBTPS1Q14703 1052 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 DUOXA2Q1HG44 320 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 SWI5Q1ZZU3 235 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 NUTM2GQ5VZR2 741 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 OLFML2BQ68BL8 750 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 MCTP1Q6DN14 999 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 PDE12Q6L8Q7 609 aaKnown RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 ZNF746Q6NUN9 644 aaPredicted RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 PRR23CQ6ZRP0 262 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 DHX32Q7L7V1 743 aaKnown RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 BTLAQ7Z6A9 289 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 VSIG10LQ86VR7 867 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 NCAPG2Q86XI2 1143 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 CLEC10AQ8IUN9 316 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 SLC9A9Q8IVB4 645 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 TP53INP2Q8IXH6 220 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 DMRTC2Q8IXT2 367 aaPredicted RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 ALDH16A1Q8IZ83 802 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 FMR1NBQ8N0W7 255 aaPredicted RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 OGFOD1Q8N543 542 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 TPCN2Q8NHX9 752 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 WHAMMQ8TF30 809 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 WFDC12Q8WWY7 111 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 UTP4Q969X6 686 aaKnown RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 CALR3Q96L12 384 aaKnown RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 TOX2Q96NM4 488 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 TRAIPQ9BWF2 469 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 CDCA7Q9BWT1 371 aaPredicted RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 PHACTR1Q9C0D0 580 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 FHDC1Q9C0D6 1143 aaPredicted RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 ADAM19Q9H013 955 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 RNF208Q9H0X6 261 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 HMX1Q9NP08 348 aaPredicted RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 OSGEPQ9NPF4 335 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 SEC31BQ9NQW1 1179 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 RAD18Q9NS91 495 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 NDFIP2Q9NV92 336 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 DNAJB12Q9NXW2 375 aaKnown RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 MKRN1Q9UHC7 482 aaKnown RBP0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 SLC6A14Q9UN76 642 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 RAXQ9Y2V3 346 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 SAMM50Q9Y512 469 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 ATAD2Q6PL18 1390 aa0.92□□□□□ -2.26
RNU4-54P-201ENST00000516428 LOC102724428A0A0B4J2F2 783 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 LOC105371045A0A1W2PR82 267 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 USP17L3A6NCW0 530 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 USP17L4A6NCW7 530 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 ARID3CA6NKF2 412 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 FAM196BA6NMK8 535 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 PATL2C9JE40 543 aaKnown RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 EFSO43281 561 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 HYAL3O43820 417 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 XYLBO75191 536 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 FARP2O94887 1054 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 EGFRP00533 1210 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 HSP90B1P14625 803 aaKnown RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 RAC2P15153 192 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 ATP4AP20648 1035 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 CYP7A1P22680 504 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 CD68P34810 354 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 CHRNA4P43681 627 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 SCTRP47872 440 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 IREB2P48200 963 aaKnown RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 IDH3AP50213 366 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 GP2P55259 537 aaKnown RBP0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms