RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 GLRX3O76003 335 aaKnown RBP13.29□□□□□ -0.28
SH3RF1-203ENST00000508685 ANO2Q9NQ90 1003 aa13.29□□□□□ -0.28
SH3RF1-203ENST00000508685 EP400Q96L91 3159 aa13.28□□□□□ -0.28
SH3RF1-203ENST00000508685 MBD3O95983 291 aa13.28□□□□□ -0.28
SH3RF1-203ENST00000508685 KIF6Q6ZMV9 814 aa13.28□□□□□ -0.28
SH3RF1-203ENST00000508685 CNTROBQ8N137 903 aa13.28□□□□□ -0.28
SH3RF1-203ENST00000508685 TCIRG1Q13488 830 aa13.27□□□□□ -0.28
SH3RF1-203ENST00000508685 CUL4AQ13619 759 aa13.27□□□□□ -0.28
SH3RF1-203ENST00000508685 BARGINQ6ZT62 677 aa13.27□□□□□ -0.28
SH3RF1-203ENST00000508685 GPATCH3Q96I76 525 aa13.27□□□□□ -0.28
SH3RF1-203ENST00000508685 ISCA1Q9BUE6 129 aa13.27□□□□□ -0.28
SH3RF1-203ENST00000508685 NEK4P51957 841 aa13.27□□□□□ -0.29
SH3RF1-203ENST00000508685 TFCP2Q12800 502 aa13.27□□□□□ -0.29
SH3RF1-203ENST00000508685 HLFQ16534 295 aa13.27□□□□□ -0.29
SH3RF1-203ENST00000508685 NAP1L5Q96NT1 182 aaPredicted RBP13.27□□□□□ -0.29
SH3RF1-203ENST00000508685 MAP3K15Q6ZN16 1313 aa13.26□□□□□ -0.29
SH3RF1-203ENST00000508685 ZSCAN23Q3MJ62 389 aa13.26□□□□□ -0.29
SH3RF1-203ENST00000508685 ZSCAN30Q86W11 494 aa13.26□□□□□ -0.29
SH3RF1-203ENST00000508685 GPTP24298 496 aa13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 KRT27Q7Z3Y8 459 aa13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 FAM89AQ96GI7 184 aa13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 PALD1Q9ULE6 856 aa13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 KCNQ2O43526 872 aa13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 NCLP19338 710 aaKnown RBP13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 CAVIN1Q6NZI2 390 aaKnown RBP13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 CWC27Q6UX04 472 aaKnown RBP13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 GIGYF2Q6Y7W6 1299 aaKnown RBP13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 TMX3Q96JJ7 454 aa13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 DBNLQ9UJU6 430 aaKnown RBP13.25□□□□□ -0.29
SH3RF1-203ENST00000508685 SGSM2O43147 1006 aa13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 PRPF40AO75400 957 aaKnown RBP13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 TNNI3KQ59H18 835 aa13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 SYNE4Q8N205 404 aa13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 KLHL34Q8N239 644 aa13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 UPF1Q92900 1129 aaKnown RBP eCLIP13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 ZNF594Q96JF6 807 aaPredicted RBP13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 BOLA2Q9H3K6 86 aa13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 TBC1D2BQ9UPU7 963 aa13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 FPGT-TNNI3KV9GXZ4 949 aa13.24□□□□□ -0.29
SH3RF1-203ENST00000508685 BRD1O95696 1058 aa13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 TRIM28Q13263 835 aaKnown RBP13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 ATG9AQ7Z3C6 839 aa13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 ZGPATQ8N5A5 531 aaKnown RBP13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 SYAP1Q96A49 352 aaPredicted RBP13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 CCDC85AQ96PX6 553 aaPredicted RBP13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 ZDHHC9Q9Y397 364 aa13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 MSNP26038 577 aaKnown RBP13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 ATP6V1AP38606 617 aa13.23□□□□□ -0.29
SH3RF1-203ENST00000508685 THSD7AQ9UPZ6 1657 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 LOC102724428A0A0B4J2F2 783 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 TPM2P07951 284 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 IL6STP40189 918 aaPredicted RBP13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 TERF1P54274 439 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 SIK1P57059 783 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 LRRC24Q50LG9 513 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 LRSAM1Q6UWE0 723 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 NLRP10Q86W26 655 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 DZIP3Q86Y13 1208 aaKnown RBP13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 ZBTB38Q8NAP3 1195 aaPredicted RBP13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 EVI5LQ96CN4 794 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 NDUFB9Q9Y6M9 179 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 BRWD3Q6RI45 1802 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 PALLDQ8WX93 1383 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 PCCAP05165 728 aaPredicted RBP13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 MCM5P33992 734 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 CRKLP46109 303 aaKnown RBP13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 ITPK1Q13572 414 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 INTS5Q6P9B9 1019 aaKnown RBP13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 EDC3Q96F86 508 aaKnown RBP13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 DBNDD2Q9BQY9 259 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 DIAPH3Q9NSV4 1193 aa13.22□□□□□ -0.29
SH3RF1-203ENST00000508685 PKP1Q13835 747 aa13.21□□□□□ -0.29
SH3RF1-203ENST00000508685 PDLIM2Q96JY6 352 aa13.21□□□□□ -0.29
SH3RF1-203ENST00000508685 PUS3Q9BZE2 481 aaKnown RBP13.21□□□□□ -0.29
SH3RF1-203ENST00000508685 RAD50Q92878 1312 aa13.21□□□□□ -0.3
SH3RF1-203ENST00000508685 PHF14O94880 888 aa13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 GPT2Q8TD30 523 aa13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 LSG1Q9H089 658 aaKnown RBP13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 UBN2Q6ZU65 1347 aa13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 ANKRD36CQ5JPF3 1778 aa13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 HSPA4P34932 840 aa13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 EIF5P55010 431 aaKnown RBP13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 FAM227BQ96M60 508 aa13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 CCDC87Q9NVE4 849 aa13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 WDR33Q9C0J8 1336 aaKnown RBP13.2□□□□□ -0.3
SH3RF1-203ENST00000508685 NUP98P52948 1817 aa13.19□□□□□ -0.3
SH3RF1-203ENST00000508685 EYA2O00167 538 aa13.19□□□□□ -0.3
SH3RF1-203ENST00000508685 IL15P40933 162 aaPredicted RBP13.19□□□□□ -0.3
SH3RF1-203ENST00000508685 TIMM10P62072 90 aa13.19□□□□□ -0.3
SH3RF1-203ENST00000508685 CCDC57Q2TAC2 916 aa13.19□□□□□ -0.3
SH3RF1-203ENST00000508685 PTF1AQ7RTS3 328 aa13.19□□□□□ -0.3
SH3RF1-203ENST00000508685 FSD1Q9BTV5 496 aa13.19□□□□□ -0.3
SH3RF1-203ENST00000508685 ATP5JP18859 108 aa13.18□□□□□ -0.3
SH3RF1-203ENST00000508685 KCNQ4P56696 695 aa13.18□□□□□ -0.3
SH3RF1-203ENST00000508685 HSP90AB3PQ58FF7 597 aa13.18□□□□□ -0.3
SH3RF1-203ENST00000508685 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.18□□□□□ -0.3
SH3RF1-203ENST00000508685 NEUROD6Q96NK8 337 aa13.18□□□□□ -0.3
SH3RF1-203ENST00000508685 UPF3BQ9BZI7 483 aaKnown RBP13.18□□□□□ -0.3
SH3RF1-203ENST00000508685 RBSNQ9H1K0 784 aa13.18□□□□□ -0.3
SH3RF1-203ENST00000508685 TRMT112Q9UI30 125 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms