RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 EPHA10Q5JZY3 1008 aa9□□□□□ -0.97
NUP54-204ENST00000506098 BICDL1Q6ZP65 573 aa9□□□□□ -0.97
NUP54-204ENST00000506098 NBPF5PQ86XG9 351 aaPredicted RBP9□□□□□ -0.97
NUP54-204ENST00000506098 SYNE4Q8N205 404 aa9□□□□□ -0.97
NUP54-204ENST00000506098 SSH3Q8TE77 659 aa9□□□□□ -0.97
NUP54-204ENST00000506098 JARID2Q92833 1246 aaPredicted RBP9□□□□□ -0.97
NUP54-204ENST00000506098 PDGFDQ9GZP0 370 aaPredicted RBP9□□□□□ -0.97
NUP54-204ENST00000506098 LRP5O75197 1615 aa9□□□□□ -0.97
NUP54-204ENST00000506098 MYH7P12883 1935 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 RTL9Q8NET4 1388 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 PNMA6EA0A0J9YXQ4 647 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 SF3B3Q15393 1217 aaKnown RBP8.99□□□□□ -0.97
NUP54-204ENST00000506098 ERFEQ4G0M1 354 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 RTL5Q5HYW3 569 aaPredicted RBP8.99□□□□□ -0.97
NUP54-204ENST00000506098 PRR5LQ6MZQ0 368 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 NUTM1Q86Y26 1132 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 TTLL11Q8NHH1 800 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 RWDD1Q9H446 243 aaPredicted RBP8.99□□□□□ -0.97
NUP54-204ENST00000506098 MYO5AQ9Y4I1 1855 aaKnown RBP8.99□□□□□ -0.97
NUP54-204ENST00000506098 AKAP11Q9UKA4 1901 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 KDM2BQ8NHM5 1336 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 ABCC12Q96J65 1359 aa8.99□□□□□ -0.97
NUP54-204ENST00000506098 COL4A1P02462 1669 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 KLRG2A4D1S0 409 aaPredicted RBP8.98□□□□□ -0.97
NUP54-204ENST00000506098 FAM177BA6PVY3 158 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 HMMRO75330 724 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 IGHDP01880 384 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 MMP10P09238 476 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 RFX5P48382 616 aaPredicted RBP8.98□□□□□ -0.97
NUP54-204ENST00000506098 CTSWP56202 376 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 R3HDM1Q15032 1099 aaKnown RBP8.98□□□□□ -0.97
NUP54-204ENST00000506098 LMBR1LQ6UX01 489 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 CNBD1Q8NA66 436 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 CCDC136Q96JN2 1154 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 MTFR1LQ9H019 292 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 DCTPP1Q9H773 170 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 PARP3Q9Y6F1 533 aa8.98□□□□□ -0.97
NUP54-204ENST00000506098 LTBP1Q14766 1721 aa8.97□□□□□ -0.97
NUP54-204ENST00000506098 SRGAP3O43295 1099 aa8.97□□□□□ -0.97
NUP54-204ENST00000506098 HCLS1P14317 486 aaPredicted RBP8.97□□□□□ -0.97
NUP54-204ENST00000506098 GTF2E1P29083 439 aaPredicted RBP8.97□□□□□ -0.97
NUP54-204ENST00000506098 ST5P78524 1137 aa8.97□□□□□ -0.97
NUP54-204ENST00000506098 SMC5Q8IY18 1101 aa8.97□□□□□ -0.97
NUP54-204ENST00000506098 NLRP3Q96P20 1036 aa8.97□□□□□ -0.97
NUP54-204ENST00000506098 COPRSQ9NQ92 184 aa8.97□□□□□ -0.97
NUP54-204ENST00000506098 NOP58Q9Y2X3 529 aaKnown RBP8.97□□□□□ -0.97
NUP54-204ENST00000506098 FER1L6Q2WGJ9 1857 aa8.97□□□□□ -0.97
NUP54-204ENST00000506098 DICER1Q9UPY3 1922 aaKnown RBP8.97□□□□□ -0.97
NUP54-204ENST00000506098 SBF1O95248 1867 aa8.96□□□□□ -0.97
NUP54-204ENST00000506098 PTPN12Q05209 780 aaKnown RBP8.96□□□□□ -0.98
NUP54-204ENST00000506098 CRY2Q49AN0 593 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 CCDC152Q4G0S7 254 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 MSL1Q68DK7 614 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 B4GALNT3Q6L9W6 998 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 CENPQQ7L2Z9 268 aaPredicted RBP8.96□□□□□ -0.98
NUP54-204ENST00000506098 GCC1Q96CN9 775 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 SGIP1Q9BQI5 828 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 BRIP1Q9BX63 1249 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 FBXO3Q9UK99 471 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 PSME4Q14997 1843 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 C10orf71Q711Q0 1435 aa8.96□□□□□ -0.98
NUP54-204ENST00000506098 SOCS7O14512 581 aa8.95□□□□□ -0.98
NUP54-204ENST00000506098 ITGA6P23229 1130 aa8.95□□□□□ -0.98
NUP54-204ENST00000506098 CCDC57Q2TAC2 916 aa8.95□□□□□ -0.98
NUP54-204ENST00000506098 C3orf67Q6ZVT6 689 aa8.95□□□□□ -0.98
NUP54-204ENST00000506098 GREM2Q9H772 168 aa8.95□□□□□ -0.98
NUP54-204ENST00000506098 ANKRD18BA2A2Z9 1011 aa8.94□□□□□ -0.98
NUP54-204ENST00000506098 PSDA5PKW4 1024 aaPredicted RBP8.94□□□□□ -0.98
NUP54-204ENST00000506098 NPHP1O15259 732 aa8.94□□□□□ -0.98
NUP54-204ENST00000506098 RAB11FIP3O75154 756 aa8.94□□□□□ -0.98
NUP54-204ENST00000506098 HOXA10P31260 410 aaPredicted RBP8.94□□□□□ -0.98
NUP54-204ENST00000506098 PDE6BP35913 854 aa8.94□□□□□ -0.98
NUP54-204ENST00000506098 IFIT5Q13325 482 aaKnown RBP8.94□□□□□ -0.98
NUP54-204ENST00000506098 FAM161AQ3B820 660 aa8.94□□□□□ -0.98
NUP54-204ENST00000506098 HSP90AB4PQ58FF6 505 aa8.94□□□□□ -0.98
NUP54-204ENST00000506098 PDZRN3Q9UPQ7 1066 aa8.94□□□□□ -0.98
NUP54-204ENST00000506098 SURF6O75683 361 aaKnown RBP8.93□□□□□ -0.98
NUP54-204ENST00000506098 CIAO1O76071 339 aa8.93□□□□□ -0.98
NUP54-204ENST00000506098 ZBTB7AO95365 584 aa8.93□□□□□ -0.98
NUP54-204ENST00000506098 POLD1P28340 1107 aa8.93□□□□□ -0.98
NUP54-204ENST00000506098 PTGER2P43116 358 aa8.93□□□□□ -0.98
NUP54-204ENST00000506098 CCDC24Q8N4L8 307 aa8.93□□□□□ -0.98
NUP54-204ENST00000506098 CRAMP1Q96RY5 1269 aa8.93□□□□□ -0.98
NUP54-204ENST00000506098 PA2G4Q9UQ80 394 aaKnown RBP8.93□□□□□ -0.98
NUP54-204ENST00000506098 ATF5Q9Y2D1 282 aaPredicted RBP8.93□□□□□ -0.98
NUP54-204ENST00000506098 CHMP3Q9Y3E7 222 aa8.93□□□□□ -0.98
NUP54-204ENST00000506098 DOCK2Q92608 1830 aa8.93□□□□□ -0.98
NUP54-204ENST00000506098 ZNF646O15015 1829 aaPredicted RBP8.92□□□□□ -0.98
NUP54-204ENST00000506098 EYA2O00167 538 aa8.92□□□□□ -0.98
NUP54-204ENST00000506098 SASH1O94885 1247 aa8.92□□□□□ -0.98
NUP54-204ENST00000506098 SRGNP10124 158 aa8.92□□□□□ -0.98
NUP54-204ENST00000506098 NUCB1Q02818 461 aa8.92□□□□□ -0.98
NUP54-204ENST00000506098 G3BP1Q13283 466 aaKnown RBP eCLIP8.92□□□□□ -0.98
NUP54-204ENST00000506098 DDX46Q7L014 1031 aaKnown RBP8.92□□□□□ -0.98
NUP54-204ENST00000506098 ATG9AQ7Z3C6 839 aa8.92□□□□□ -0.98
NUP54-204ENST00000506098 ERC1Q8IUD2 1116 aa8.92□□□□□ -0.98
NUP54-204ENST00000506098 KLHDC4Q8TBB5 520 aa8.92□□□□□ -0.98
NUP54-204ENST00000506098 ZNF594Q96JF6 807 aaPredicted RBP8.92□□□□□ -0.98
NUP54-204ENST00000506098 CDC5LQ99459 802 aaKnown RBP8.92□□□□□ -0.98
NUP54-204ENST00000506098 SEC31BQ9NQW1 1179 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms