RNA–Protein interactions for RNA: ENST00000498658.5

FXR1-222, Transcript of FMR1 autosomal homolog 1, human

TSL 2

Gene FXR1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FXR1-222	ENST00000498658	SYNE4	Q8N205	404 aa		13.4	□□□□□ -0.26
FXR1-222	ENST00000498658	GRAPL	Q8TC17	118 aa	Predicted RBP	13.4	□□□□□ -0.26
FXR1-222	ENST00000498658	DNAAF4	Q8WXU2	420 aa		13.4	□□□□□ -0.26
FXR1-222	ENST00000498658	ATP6V0A2	Q9Y487	856 aa		13.4	□□□□□ -0.26
FXR1-222	ENST00000498658	CCDC88A	Q3V6T2	1871 aa		13.4	□□□□□ -0.26
FXR1-222	ENST00000498658	ABCC4	O15439	1325 aa		13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	CDHR2	Q9BYE9	1310 aa		13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	DICER1	Q9UPY3	1922 aa	Known RBP	13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	NEURL1B	A8MQ27	555 aa		13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	PDE8A	O60658	829 aa		13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	RTL5	Q5HYW3	569 aa	Predicted RBP	13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	SP8	Q8IXZ3	490 aa		13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	SUPT20H	Q8NEM7	779 aa		13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	LINS1	Q8NG48	757 aa		13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	VPS33B	Q9H267	617 aa		13.39	□□□□□ -0.27
FXR1-222	ENST00000498658	LAMB2	P55268	1798 aa		13.38	□□□□□ -0.27
FXR1-222	ENST00000498658	GLTPD2	A6NH11	291 aa		13.38	□□□□□ -0.27
FXR1-222	ENST00000498658	IGKV5-2	P06315	115 aa		13.38	□□□□□ -0.27
FXR1-222	ENST00000498658	CCDC152	Q4G0S7	254 aa		13.38	□□□□□ -0.27
FXR1-222	ENST00000498658	DDX60	Q8IY21	1712 aa	Known RBP	13.38	□□□□□ -0.27
FXR1-222	ENST00000498658	IARS	P41252	1262 aa	Known RBP	13.37	□□□□□ -0.27
FXR1-222	ENST00000498658	PRELP	P51888	382 aa		13.37	□□□□□ -0.27
FXR1-222	ENST00000498658	C1QTNF8	P60827	252 aa		13.37	□□□□□ -0.27
FXR1-222	ENST00000498658	TRMT2A	Q8IZ69	625 aa	Known RBP	13.37	□□□□□ -0.27
FXR1-222	ENST00000498658	JDP2	Q8WYK2	163 aa		13.37	□□□□□ -0.27
FXR1-222	ENST00000498658	TIAM2	Q8IVF5	1701 aa		13.36	□□□□□ -0.27
FXR1-222	ENST00000498658	POLA2	Q14181	598 aa		13.36	□□□□□ -0.27
FXR1-222	ENST00000498658	GCKR	Q14397	625 aa		13.36	□□□□□ -0.27
FXR1-222	ENST00000498658	CWF19L2	Q2TBE0	894 aa	Known RBP	13.36	□□□□□ -0.27
FXR1-222	ENST00000498658	ALDH1L2	Q3SY69	923 aa		13.36	□□□□□ -0.27
FXR1-222	ENST00000498658	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.36	□□□□□ -0.27
FXR1-222	ENST00000498658	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.36	□□□□□ -0.27
FXR1-222	ENST00000498658	PTPRC	P08575	1304 aa		13.36	□□□□□ -0.27
FXR1-222	ENST00000498658		H7C1W4	665 aa		13.35	□□□□□ -0.27
FXR1-222	ENST00000498658	RPS8	P62241	208 aa	Known RBP	13.35	□□□□□ -0.27
FXR1-222	ENST00000498658	OLFM4	Q6UX06	510 aa		13.35	□□□□□ -0.27
FXR1-222	ENST00000498658	DPP8	Q6V1X1	898 aa	Predicted RBP	13.35	□□□□□ -0.27
FXR1-222	ENST00000498658	MPND	Q8N594	471 aa		13.35	□□□□□ -0.27
FXR1-222	ENST00000498658	CDCA7L	Q96GN5	454 aa		13.35	□□□□□ -0.27
FXR1-222	ENST00000498658	SNED1	Q8TER0	1413 aa		13.35	□□□□□ -0.27
FXR1-222	ENST00000498658	KIF3C	O14782	793 aa		13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	TOMM70	O94826	608 aa		13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	VEGFA	P15692	232 aa	Predicted RBP	13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	CTSW	P56202	376 aa		13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	UBE3B	Q7Z3V4	1068 aa		13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	CDC5L	Q99459	802 aa	Known RBP	13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	PLA2G12B	Q9BX93	195 aa		13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	NMRK2	Q9NPI5	230 aa		13.34	□□□□□ -0.27
FXR1-222	ENST00000498658	ALDH1L1	O75891	902 aa		13.33	□□□□□ -0.28
FXR1-222	ENST00000498658	BEND3	Q5T5X7	828 aa		13.33	□□□□□ -0.28
FXR1-222	ENST00000498658	LARGE2	Q8N3Y3	721 aa		13.33	□□□□□ -0.28
FXR1-222	ENST00000498658	MRPL50	Q8N5N7	158 aa	Known RBP	13.33	□□□□□ -0.28
FXR1-222	ENST00000498658	CELF1	Q92879	486 aa	Known RBP	13.33	□□□□□ -0.28
FXR1-222	ENST00000498658	RRAGC	Q9HB90	399 aa		13.33	□□□□□ -0.28
FXR1-222	ENST00000498658	RTL9	Q8NET4	1388 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658		F6X3S4	739 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	FZD9	O00144	591 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	PPIP5K2	O43314	1243 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	EIF6	P56537	245 aa	Known RBP	13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	ANKRD18A	Q8IVF6	992 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	SSH1	Q8WYL5	1049 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	JARID2	Q92833	1246 aa	Predicted RBP	13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	SRCIN1	Q9C0H9	1055 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	SMC4	Q9NTJ3	1288 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	MYH3	P11055	1940 aa		13.32	□□□□□ -0.28
FXR1-222	ENST00000498658	IQCA1L	A6NCM1	817 aa		13.31	□□□□□ -0.28
FXR1-222	ENST00000498658	SLC4A10	Q6U841	1118 aa		13.31	□□□□□ -0.28
FXR1-222	ENST00000498658	NIM1K	Q8IY84	436 aa		13.31	□□□□□ -0.28
FXR1-222	ENST00000498658	TTLL11	Q8NHH1	800 aa		13.31	□□□□□ -0.28
FXR1-222	ENST00000498658	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.31	□□□□□ -0.28
FXR1-222	ENST00000498658	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.31	□□□□□ -0.28
FXR1-222	ENST00000498658	LRRC37A	A6NMS7	1700 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	GRM8	O00222	908 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	ABCB7	O75027	752 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	BRPF1	P55201	1214 aa	Predicted RBP	13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	CASP7	P55210	303 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	GPC2	Q8N158	579 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	RBM46	Q8TBY0	533 aa	Known RBP	13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	EYA3	Q99504	573 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	SEC31B	Q9NQW1	1179 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	PODXL2	Q9NZ53	605 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	WDR90	Q96KV7	1748 aa		13.3	□□□□□ -0.28
FXR1-222	ENST00000498658	TAF1	P21675	1872 aa		13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	DDN	O94850	711 aa	Predicted RBP	13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	CSF1R	P07333	972 aa		13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	IGHMBP2	P38935	993 aa	Known RBP	13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	KIAA2012	Q0VF49	1180 aa		13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	FSTL1	Q12841	308 aa		13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	AOC3	Q16853	763 aa		13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	GREM2	Q9H772	168 aa		13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	BSDC1	Q9NW68	430 aa	Predicted RBP	13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	ANKIB1	Q9P2G1	1089 aa		13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	ZNRF3	Q9ULT6	936 aa		13.29	□□□□□ -0.28
FXR1-222	ENST00000498658	C6orf229	H3BNL8	230 aa		13.28	□□□□□ -0.28
FXR1-222	ENST00000498658	WASHC4	Q2M389	1173 aa		13.28	□□□□□ -0.28

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