RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CCDC39Q9UFE4 941 aa19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 MTMR6Q9Y217 621 aa19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 UBE2HP62256 183 aa19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 COL9A3Q14050 684 aaPredicted RBP19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SH2B1Q9NRF2 756 aaPredicted RBP19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 ABCC6O95255 1503 aa19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 MCM5P33992 734 aa19.24■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SLC39A6Q13433 755 aa19.24■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 ME3Q16798 604 aa19.24■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 CYP27B1O15528 508 aa19.24■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 ZNF790Q6PG37 636 aa19.24■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 MRC1P22897 1456 aa19.23■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 KDM6AO15550 1401 aaPredicted RBP19.23■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 NEURL1BA8MQ27 555 aa19.23■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 HIP1O00291 1037 aa19.23■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 EPHA10Q5JZY3 1008 aa19.23■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 KLHDC4Q8TBB5 520 aa19.23■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 TPCN1Q9ULQ1 816 aa19.23■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 A0A0D9SFI3 127 aa19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SLC27A2O14975 620 aa19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 VPS72Q15906 364 aa19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 UVSSAQ2YD98 709 aa19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 RIC3Q7Z5B4 369 aa19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 GJD4Q96KN9 370 aaPredicted RBP19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SIL1Q9H173 461 aa19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 ATP6V1DQ9Y5K8 247 aa19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 GLI3P10071 1580 aa19.22■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 FIBPO43427 364 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 ZKSCAN1P17029 563 aaPredicted RBP19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 NECAB1Q8N987 351 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 BOLA2Q9H3K6 86 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SLC52A2Q9HAB3 445 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 MED23Q9ULK4 1368 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 TERF1P54274 439 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 DNM1Q05193 864 aaKnown RBP19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 PDE4CQ08493 712 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 GCKRQ14397 625 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 POTEAQ6S8J7 498 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 FAM184AQ8NB25 1140 aa19.21■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 ZCRB1Q8TBF4 217 aaKnown RBP19.2■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 XAGE3Q8WTP9 111 aa19.2■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 A0A0U1RQG5 324 aaPredicted RBP19.2■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 LETM1O95202 739 aaPredicted RBP19.2■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 MYL6BP14649 208 aa19.2■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 LRP10Q7Z4F1 713 aa19.2■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 TAF6LQ9Y6J9 622 aa19.2■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 SHANK3Q9BYB0 1731 aa19.2■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 COPS6Q7L5N1 327 aa19.19■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 FUCA2Q9BTY2 467 aa19.19■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 METTL22Q9BUU2 404 aaPredicted RBP19.19■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 TRPC5Q9UL62 973 aaPredicted RBP19.19■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 TPRNQ4KMQ1 711 aa19.19■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 NFATC2IPQ8NCF5 419 aa19.19■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 MYD88Q99836 296 aa19.19■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 FSD1Q9BTV5 496 aa19.19■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 PHKG2P15735 406 aa19.18■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 KCNJ4P48050 445 aa19.18■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 PSMA5P28066 241 aa19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 RFX5P48382 616 aaPredicted RBP19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 NEXNQ0ZGT2 675 aa19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 DDB1Q16531 1140 aa19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 ZNF589Q86UQ0 364 aaPredicted RBP19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 ACSBG1Q96GR2 724 aa19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 ALDH8A1Q9H2A2 487 aaPredicted RBP19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 PDCL3Q9H2J4 239 aa19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 WNK3Q9BYP7 1800 aa19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 PARP4Q9UKK3 1724 aaKnown RBP19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 HCLS1P14317 486 aaPredicted RBP19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 ZNF496Q96IT1 587 aaPredicted RBP19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 R3HCC1Q9Y3T6 440 aaKnown RBP19.17■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 EXOC5O00471 708 aa19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 EDC3Q96F86 508 aaKnown RBP19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 COPRSQ9NQ92 184 aa19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 DISP2A7MBM2 1401 aa19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 VPS37CA5D8V6 355 aaPredicted RBP19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 RPS6KB1P23443 525 aa19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 CSPP1Q1MSJ5 1256 aa19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 SYTL4Q96C24 671 aaPredicted RBP19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 USP25Q9UHP3 1055 aa19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 USP16Q9Y5T5 823 aa19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 ATRNO75882 1429 aa19.16■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 AFDNP55196 1824 aaKnown RBP19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 TOB2Q14106 344 aaPredicted RBP19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 TSGA10IPQ3SY00 556 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 BLOC1S2Q6QNY1 142 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 PTF1AQ7RTS3 328 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 KLHL34Q8N239 644 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 JARID2Q92833 1246 aaPredicted RBP19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 TCEANC2Q96MN5 208 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 PRDM4Q9UKN5 801 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 SRCAPQ6ZRS2 3230 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 TAF5LO75529 589 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 LARP1BQ659C4 914 aaKnown RBP19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 GIMAP6Q6P9H5 292 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 ANKRD13DQ6ZTN6 518 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 SEPT12Q8IYM1 358 aa19.15■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 MARCH10Q8NA82 808 aaPredicted RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms