RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 COX20Q5RI15 118 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 TRIM22Q8IYM9 498 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 HSH2DQ96JZ2 352 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 CRISPLD1Q9H336 500 aa10.24□□□□□ -0.77
VIM-207ENST00000495528 THBS1P07996 1170 aa10.23□□□□□ -0.77
VIM-207ENST00000495528 C16orf46Q6P387 395 aa10.23□□□□□ -0.77
VIM-207ENST00000495528 AEBP1Q8IUX7 1158 aa10.23□□□□□ -0.77
VIM-207ENST00000495528 C7orf43Q8WVR3 580 aa10.23□□□□□ -0.77
VIM-207ENST00000495528 ZNF837Q96EG3 531 aaPredicted RBP10.23□□□□□ -0.77
VIM-207ENST00000495528 LRFN2Q9ULH4 789 aa10.23□□□□□ -0.77
VIM-207ENST00000495528 ZMYM3Q14202 1370 aa10.23□□□□□ -0.77
VIM-207ENST00000495528 CCDC18Q5T9S5 1454 aa10.23□□□□□ -0.77
VIM-207ENST00000495528 BRD1O95696 1058 aa10.22□□□□□ -0.77
VIM-207ENST00000495528 ABL1P00519 1130 aa10.22□□□□□ -0.77
VIM-207ENST00000495528 ZNF280CQ8ND82 737 aa10.22□□□□□ -0.77
VIM-207ENST00000495528 GTPBP3Q969Y2 492 aaKnown RBP10.22□□□□□ -0.77
VIM-207ENST00000495528 COL26A1Q96A83 441 aa10.22□□□□□ -0.77
VIM-207ENST00000495528 SUSD3Q96L08 255 aa10.22□□□□□ -0.77
VIM-207ENST00000495528 SPAG9O60271 1321 aaKnown RBP10.22□□□□□ -0.77
VIM-207ENST00000495528 CNTLNQ9NXG0 1405 aa10.22□□□□□ -0.77
VIM-207ENST00000495528 PREX2Q70Z35 1606 aa10.22□□□□□ -0.77
VIM-207ENST00000495528 C3P01024 1663 aa10.22□□□□□ -0.77
VIM-207ENST00000495528 H3BM21 787 aa10.21□□□□□ -0.77
VIM-207ENST00000495528 GPR25O00155 361 aa10.21□□□□□ -0.77
VIM-207ENST00000495528 ARID4AP29374 1257 aaPredicted RBP10.21□□□□□ -0.77
VIM-207ENST00000495528 SV2AQ7L0J3 742 aa10.21□□□□□ -0.77
VIM-207ENST00000495528 GTF3C2Q8WUA4 911 aaPredicted RBP10.21□□□□□ -0.77
VIM-207ENST00000495528 ANO2Q9NQ90 1003 aa10.21□□□□□ -0.77
VIM-207ENST00000495528 NCOA1Q15788 1441 aa10.21□□□□□ -0.78
VIM-207ENST00000495528 GPATCH8Q9UKJ3 1502 aaKnown RBP10.21□□□□□ -0.78
VIM-207ENST00000495528 KIDINS220Q9ULH0 1771 aa10.21□□□□□ -0.78
VIM-207ENST00000495528 SERPINB4P48594 390 aa10.2□□□□□ -0.78
VIM-207ENST00000495528 MTMR3Q13615 1198 aa10.2□□□□□ -0.78
VIM-207ENST00000495528 LTBP4Q8N2S1 1624 aa10.2□□□□□ -0.78
VIM-207ENST00000495528 SLC16A10Q8TF71 515 aa10.2□□□□□ -0.78
VIM-207ENST00000495528 MYO19Q96H55 970 aa10.2□□□□□ -0.78
VIM-207ENST00000495528 ZCCHC2Q9C0B9 1178 aaKnown RBP10.2□□□□□ -0.78
VIM-207ENST00000495528 CFDP1Q9UEE9 299 aaPredicted RBP10.2□□□□□ -0.78
VIM-207ENST00000495528 MTMR7Q9Y216 660 aa10.2□□□□□ -0.78
VIM-207ENST00000495528 ITSN2Q9NZM3 1697 aa10.19□□□□□ -0.78
VIM-207ENST00000495528 SAMD9LQ8IVG5 1584 aa10.19□□□□□ -0.78
VIM-207ENST00000495528 ZNF211Q13398 564 aaPredicted RBP10.19□□□□□ -0.78
VIM-207ENST00000495528 C11orf91Q3C1V1 193 aa10.19□□□□□ -0.78
VIM-207ENST00000495528 GGT6Q6P531 493 aa10.19□□□□□ -0.78
VIM-207ENST00000495528 NPAS3Q8IXF0 933 aa10.19□□□□□ -0.78
VIM-207ENST00000495528 NPATQ14207 1427 aa10.18□□□□□ -0.78
VIM-207ENST00000495528 NLRP8Q86W28 1048 aa10.18□□□□□ -0.78
VIM-207ENST00000495528 IFT43Q96FT9 208 aa10.18□□□□□ -0.78
VIM-207ENST00000495528 ANKIB1Q9P2G1 1089 aa10.18□□□□□ -0.78
VIM-207ENST00000495528 BCS1LQ9Y276 419 aa10.18□□□□□ -0.78
VIM-207ENST00000495528 DNMT3AQ9Y6K1 912 aaPredicted RBP10.18□□□□□ -0.78
VIM-207ENST00000495528 SYCP2Q9BX26 1530 aa10.17□□□□□ -0.78
VIM-207ENST00000495528 KIAA1107Q9UPP5 1409 aa10.17□□□□□ -0.78
VIM-207ENST00000495528 ERBB4Q15303 1308 aa10.17□□□□□ -0.78
VIM-207ENST00000495528 ZNF335Q9H4Z2 1342 aaPredicted RBP10.17□□□□□ -0.78
VIM-207ENST00000495528 CDC42BPAQ5VT25 1732 aa10.17□□□□□ -0.78
VIM-207ENST00000495528 DCDC2BA2VCK2 349 aa10.17□□□□□ -0.78
VIM-207ENST00000495528 ATXN7O15265 892 aaPredicted RBP10.17□□□□□ -0.78
VIM-207ENST00000495528 LBRQ14739 615 aaKnown RBP10.17□□□□□ -0.78
VIM-207ENST00000495528 FOXR1Q6PIV2 292 aa10.17□□□□□ -0.78
VIM-207ENST00000495528 GPR161Q8N6U8 529 aaKnown RBP10.17□□□□□ -0.78
VIM-207ENST00000495528 NANOS1Q8WY41 292 aaKnown RBP10.17□□□□□ -0.78
VIM-207ENST00000495528 GMCL1Q96IK5 515 aa10.17□□□□□ -0.78
VIM-207ENST00000495528 GPC6Q9Y625 555 aaPredicted RBP10.17□□□□□ -0.78
VIM-207ENST00000495528 FYCO1Q9BQS8 1478 aa10.17□□□□□ -0.78
VIM-207ENST00000495528 CCNB3Q8WWL7 1395 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 ZNF644Q9H582 1327 aaPredicted RBP10.16□□□□□ -0.78
VIM-207ENST00000495528 CAMSAP1Q5T5Y3 1602 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 TNFRSF10BO14763 440 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 KHNYNO15037 678 aaKnown RBP10.16□□□□□ -0.78
VIM-207ENST00000495528 NFX1Q12986 1120 aaKnown RBP10.16□□□□□ -0.78
VIM-207ENST00000495528 UBAP2LQ14157 1087 aaKnown RBP10.16□□□□□ -0.78
VIM-207ENST00000495528 FIGNL1Q6PIW4 674 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 TXNDC2Q86VQ3 553 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 CCER1Q8TC90 406 aaPredicted RBP10.16□□□□□ -0.78
VIM-207ENST00000495528 ABHD17AQ96GS6 310 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 CEP63Q96MT8 703 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 A2MP01023 1474 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 PTPRKQ15262 1439 aa10.16□□□□□ -0.78
VIM-207ENST00000495528 BNIP3LO60238 219 aa10.15□□□□□ -0.78
VIM-207ENST00000495528 HIF1AQ16665 826 aa10.15□□□□□ -0.78
VIM-207ENST00000495528 FAM26DQ5JW98 314 aa10.15□□□□□ -0.78
VIM-207ENST00000495528 HELQQ8TDG4 1101 aa10.15□□□□□ -0.78
VIM-207ENST00000495528 TRERF1Q96PN7 1200 aa10.15□□□□□ -0.78
VIM-207ENST00000495528 PCDHGC4Q9Y5F7 938 aa10.15□□□□□ -0.78
VIM-207ENST00000495528 IVNS1ABPQ9Y6Y0 642 aa10.15□□□□□ -0.78
VIM-207ENST00000495528 UBAP1LF5GYI3 381 aa10.14□□□□□ -0.79
VIM-207ENST00000495528 TGFBR3LH3BV60 316 aa10.14□□□□□ -0.79
VIM-207ENST00000495528 BRD2P25440 801 aaKnown RBP10.14□□□□□ -0.79
VIM-207ENST00000495528 BTLAQ7Z6A9 289 aa10.14□□□□□ -0.79
VIM-207ENST00000495528 ETFBKMTQ8IXQ9 262 aa10.14□□□□□ -0.79
VIM-207ENST00000495528 IRF7Q92985 503 aa10.14□□□□□ -0.79
VIM-207ENST00000495528 STIM2Q9P246 746 aa10.14□□□□□ -0.79
VIM-207ENST00000495528 IQSEC2Q5JU85 1478 aa10.14□□□□□ -0.79
VIM-207ENST00000495528 ATP7AQ04656 1500 aa10.13□□□□□ -0.79
VIM-207ENST00000495528 PLEKHH2Q8IVE3 1493 aa10.13□□□□□ -0.79
VIM-207ENST00000495528 WFS1O76024 890 aa10.13□□□□□ -0.79
VIM-207ENST00000495528 MICAL2O94851 1124 aa10.13□□□□□ -0.79
VIM-207ENST00000495528 KCNA1Q09470 495 aa10.13□□□□□ -0.79
VIM-207ENST00000495528 TREML1Q86YW5 311 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms