RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 DCAF8L1A6NGE4 600 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 APBB1O00213 710 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 NPHP1O15259 732 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 CDC45O75419 566 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 PDE6BP35913 854 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 G3BP1Q13283 466 aaKnown RBP eCLIP12.59□□□□□ -0.39
HDAC3-214ENST00000495485 TTC22Q5TAA0 569 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 SMIM5Q71RC9 77 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 NBPF5PQ86XG9 351 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-214ENST00000495485 GPATCH3Q96I76 525 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 BRIP1Q9BX63 1249 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 ZBTB3Q9H5J0 574 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 CWC25Q9NXE8 425 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-214ENST00000495485 EXOC6BQ9Y2D4 811 aa12.59□□□□□ -0.39
HDAC3-214ENST00000495485 NOP58Q9Y2X3 529 aaKnown RBP12.59□□□□□ -0.39
HDAC3-214ENST00000495485 IGKV5-2P06315 115 aa12.58□□□□□ -0.4
HDAC3-214ENST00000495485 DDR1Q08345 913 aa12.58□□□□□ -0.4
HDAC3-214ENST00000495485 HLFQ16534 295 aa12.58□□□□□ -0.4
HDAC3-214ENST00000495485 CLASRPQ8N2M8 674 aaKnown RBP12.58□□□□□ -0.4
HDAC3-214ENST00000495485 SYT17Q9BSW7 474 aa12.58□□□□□ -0.4
HDAC3-214ENST00000495485 DLEC1Q9Y238 1755 aa12.57□□□□□ -0.4
HDAC3-214ENST00000495485 GTF2E1P29083 439 aaPredicted RBP12.57□□□□□ -0.4
HDAC3-214ENST00000495485 BECN1Q14457 450 aa12.57□□□□□ -0.4
HDAC3-214ENST00000495485 RHPN1Q8TCX5 695 aa12.57□□□□□ -0.4
HDAC3-214ENST00000495485 ISCA1Q9BUE6 129 aa12.57□□□□□ -0.4
HDAC3-214ENST00000495485 UTP14AQ9BVJ6 771 aaKnown RBP12.57□□□□□ -0.4
HDAC3-214ENST00000495485 FHDC1Q9C0D6 1143 aaPredicted RBP12.57□□□□□ -0.4
HDAC3-214ENST00000495485 ERC2O15083 957 aa12.56□□□□□ -0.4
HDAC3-214ENST00000495485 MX1P20591 662 aa12.56□□□□□ -0.4
HDAC3-214ENST00000495485 PRR5LQ6MZQ0 368 aa12.56□□□□□ -0.4
HDAC3-214ENST00000495485 SUCLG2Q96I99 432 aa12.56□□□□□ -0.4
HDAC3-214ENST00000495485 BRCA1P38398 1863 aaKnown RBP12.56□□□□□ -0.4
HDAC3-214ENST00000495485 MYH3P11055 1940 aa12.56□□□□□ -0.4
HDAC3-214ENST00000495485 KLRG2A4D1S0 409 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-214ENST00000495485 H7C1W4 665 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 SMARCA5O60264 1052 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-214ENST00000495485 PDE1AP54750 535 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 SLC10A5Q5PT55 438 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 BICDL1Q6ZP65 573 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 NLRP10Q86W26 655 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 BICC1Q9H694 974 aaKnown RBP12.55□□□□□ -0.4
HDAC3-214ENST00000495485 STAP2Q9UGK3 403 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 UTRNP46939 3433 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 LAMB2P55268 1798 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 TTC41PQ6P2S7 1318 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 SH3TC1Q8TE82 1336 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 ARFGEF1Q9Y6D6 1849 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 ANKRD31Q8N7Z5 1873 aa12.55□□□□□ -0.4
HDAC3-214ENST00000495485 ATP5J2-PTCD1G3V325 749 aa12.54□□□□□ -0.4
HDAC3-214ENST00000495485 H0YIN7 160 aa12.54□□□□□ -0.4
HDAC3-214ENST00000495485 IFIT2P09913 472 aaKnown RBP12.54□□□□□ -0.4
HDAC3-214ENST00000495485 UBE3BQ7Z3V4 1068 aa12.54□□□□□ -0.4
HDAC3-214ENST00000495485 BCL11AQ9H165 835 aa12.54□□□□□ -0.4
HDAC3-214ENST00000495485 UBN2Q6ZU65 1347 aa12.54□□□□□ -0.4
HDAC3-214ENST00000495485 REC8O95072 547 aa12.53□□□□□ -0.4
HDAC3-214ENST00000495485 NTSR2O95665 410 aa12.53□□□□□ -0.4
HDAC3-214ENST00000495485 MFAP1P55081 439 aaKnown RBP12.53□□□□□ -0.4
HDAC3-214ENST00000495485 RABL6Q3YEC7 729 aaPredicted RBP12.53□□□□□ -0.4
HDAC3-214ENST00000495485 C16orf71Q8IYS4 520 aaPredicted RBP12.53□□□□□ -0.4
HDAC3-214ENST00000495485 ZBTB38Q8NAP3 1195 aaPredicted RBP12.53□□□□□ -0.4
HDAC3-214ENST00000495485 TBC1D32Q96NH3 1257 aa12.53□□□□□ -0.4
HDAC3-214ENST00000495485 C22orf23Q9BZE7 217 aa12.53□□□□□ -0.4
HDAC3-214ENST00000495485 TRMT112Q9UI30 125 aaKnown RBP12.53□□□□□ -0.4
HDAC3-214ENST00000495485 KIAA1551Q9HCM1 1747 aa12.53□□□□□ -0.4
HDAC3-214ENST00000495485 GRIN3BO60391 1043 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 PCCAP05165 728 aaPredicted RBP12.52□□□□□ -0.41
HDAC3-214ENST00000495485 GPTP24298 496 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 GRIPAP1Q4V328 841 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 SUSD4Q5VX71 490 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 STYK1Q6J9G0 422 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 CNKSR1Q969H4 720 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 NLRP3Q96P20 1036 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 COPRSQ9NQ92 184 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 PIM2Q9P1W9 311 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 FBXO3Q9UK99 471 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 CDHR2Q9BYE9 1310 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 CHD4Q14839 1912 aa12.52□□□□□ -0.41
HDAC3-214ENST00000495485 TRIM6-TRIM34B2RNG4 842 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 GLRX3O76003 335 aaKnown RBP12.51□□□□□ -0.41
HDAC3-214ENST00000495485 NPR1P16066 1061 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 ALDH1B1P30837 517 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 CRY2Q49AN0 593 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 SOGA3Q5TF21 947 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 TBC1D9Q6ZT07 1266 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 CNTROBQ8N137 903 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 KLHL34Q8N239 644 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 IL27Q8NEV9 243 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 MASTLQ96GX5 879 aa12.51□□□□□ -0.41
HDAC3-214ENST00000495485 GSPT1P15170 499 aaKnown RBP12.5□□□□□ -0.41
HDAC3-214ENST00000495485 SDSP20132 328 aa12.5□□□□□ -0.41
HDAC3-214ENST00000495485 TMC4Q7Z404 712 aa12.5□□□□□ -0.41
HDAC3-214ENST00000495485 IL1RAPL2Q9NP60 686 aa12.5□□□□□ -0.41
HDAC3-214ENST00000495485 SALL3Q9BXA9 1300 aa12.5□□□□□ -0.41
HDAC3-214ENST00000495485 AK9Q5TCS8 1911 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 HIP1O00291 1037 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 EPB41L2O43491 1005 aaKnown RBP12.49□□□□□ -0.41
HDAC3-214ENST00000495485 SEC24BO95487 1268 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 SRGNP10124 158 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 HOXA10P31260 410 aaPredicted RBP12.49□□□□□ -0.41
HDAC3-214ENST00000495485 RBM25P49756 843 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms