RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZFATQ9P243 1243 aa9.23□□□□□ -0.93
VPS50-219ENST00000495039 FAM196BA6NMK8 535 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L15C9J2P7 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L10C9JJH3 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L13C9JLJ4 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L12C9JPN9 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L11C9JVI0 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L21D6R901 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L18D6R9N7 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L22D6RA61 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L17D6RBQ6 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L19D6RCP7 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L20D6RJB6 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 RARAP10276 462 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 USP17L24Q0WX57 530 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 DGKZQ13574 1117 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 ANKMY2Q8IV38 441 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 TTC9Q92623 222 aa9.22□□□□□ -0.93
VPS50-219ENST00000495039 ZBTB42B2RXF5 422 aa9.21□□□□□ -0.94
VPS50-219ENST00000495039 HYAL3O43820 417 aaPredicted RBP9.21□□□□□ -0.94
VPS50-219ENST00000495039 KANK4Q5T7N3 995 aaPredicted RBP9.21□□□□□ -0.94
VPS50-219ENST00000495039 IGF2-ASQ6U949 168 aa9.21□□□□□ -0.94
VPS50-219ENST00000495039 FNBP4Q8N3X1 1017 aaPredicted RBP9.21□□□□□ -0.94
VPS50-219ENST00000495039 IFT43Q96FT9 208 aa9.21□□□□□ -0.94
VPS50-219ENST00000495039 PPP1R12CQ9BZL4 782 aa9.21□□□□□ -0.94
VPS50-219ENST00000495039 FOXO3O43524 673 aa9.2□□□□□ -0.94
VPS50-219ENST00000495039 MICAL2O94851 1124 aa9.2□□□□□ -0.94
VPS50-219ENST00000495039 TARSP26639 723 aaKnown RBP9.2□□□□□ -0.94
VPS50-219ENST00000495039 NOS3P29474 1203 aa9.2□□□□□ -0.94
VPS50-219ENST00000495039 IREB2P48200 963 aaKnown RBP9.2□□□□□ -0.94
VPS50-219ENST00000495039 MLLT1Q03111 559 aaPredicted RBP9.2□□□□□ -0.94
VPS50-219ENST00000495039 CLUAP1Q96AJ1 413 aa9.2□□□□□ -0.94
VPS50-219ENST00000495039 VTI1AQ96AJ9 217 aa9.2□□□□□ -0.94
VPS50-219ENST00000495039 QTRT2Q9H974 415 aaKnown RBP9.2□□□□□ -0.94
VPS50-219ENST00000495039 SASH3O75995 380 aa9.19□□□□□ -0.94
VPS50-219ENST00000495039 PRKCSHP14314 528 aaPredicted RBP9.19□□□□□ -0.94
VPS50-219ENST00000495039 PLAURQ03405 335 aa9.19□□□□□ -0.94
VPS50-219ENST00000495039 CALR3Q96L12 384 aaKnown RBP9.19□□□□□ -0.94
VPS50-219ENST00000495039 VRTNQ9H8Y1 702 aa9.19□□□□□ -0.94
VPS50-219ENST00000495039 EIF2AK2P19525 551 aaKnown RBP9.18□□□□□ -0.94
VPS50-219ENST00000495039 NRLP54845 237 aa9.18□□□□□ -0.94
VPS50-219ENST00000495039 C11orf91Q3C1V1 193 aa9.18□□□□□ -0.94
VPS50-219ENST00000495039 MYO19Q96H55 970 aa9.18□□□□□ -0.94
VPS50-219ENST00000495039 SMG9Q9H0W8 520 aaKnown RBP9.18□□□□□ -0.94
VPS50-219ENST00000495039 WEE1P30291 646 aa9.17□□□□□ -0.94
VPS50-219ENST00000495039 RNF112Q9ULX5 631 aa9.17□□□□□ -0.94
VPS50-219ENST00000495039 DEAF1O75398 565 aaPredicted RBP9.16□□□□□ -0.94
VPS50-219ENST00000495039 MEGF10Q96KG7 1140 aa9.16□□□□□ -0.94
VPS50-219ENST00000495039 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS50-219ENST00000495039 TLR7Q9NYK1 1049 aaKnown RBP9.16□□□□□ -0.94
VPS50-219ENST00000495039 DLL1O00548 723 aa9.15□□□□□ -0.94
VPS50-219ENST00000495039 EGFRP00533 1210 aa9.15□□□□□ -0.94
VPS50-219ENST00000495039 LMOD1P29536 600 aaPredicted RBP9.15□□□□□ -0.94
VPS50-219ENST00000495039 HFE2Q6ZVN8 426 aa9.15□□□□□ -0.94
VPS50-219ENST00000495039 ARXQ96QS3 562 aa9.15□□□□□ -0.94
VPS50-219ENST00000495039 RTCBQ9Y3I0 505 aaKnown RBP9.15□□□□□ -0.94
VPS50-219ENST00000495039 PRR23CQ6ZRP0 262 aa9.14□□□□□ -0.95
VPS50-219ENST00000495039 XYLBO75191 536 aa9.13□□□□□ -0.95
VPS50-219ENST00000495039 PSAPP07602 524 aa9.13□□□□□ -0.95
VPS50-219ENST00000495039 DCAF11Q8TEB1 546 aa9.13□□□□□ -0.95
VPS50-219ENST00000495039 PLD4Q96BZ4 506 aa9.13□□□□□ -0.95
VPS50-219ENST00000495039 MRPL18Q9H0U6 180 aaKnown RBP9.13□□□□□ -0.95
VPS50-219ENST00000495039 AKTIPQ9H8T0 292 aa9.13□□□□□ -0.95
VPS50-219ENST00000495039 OPLAHO14841 1288 aa9.12□□□□□ -0.95
VPS50-219ENST00000495039 RBSNQ9H1K0 784 aa9.12□□□□□ -0.95
VPS50-219ENST00000495039 SRA1Q9HD15 236 aaKnown RBP9.12□□□□□ -0.95
VPS50-219ENST00000495039 USP20Q9Y2K6 914 aa9.12□□□□□ -0.95
VPS50-219ENST00000495039 LOC102724428A0A0B4J2F2 783 aa9.11□□□□□ -0.95
VPS50-219ENST00000495039 GHRHP01286 108 aa9.11□□□□□ -0.95
VPS50-219ENST00000495039 SIK1P57059 783 aa9.11□□□□□ -0.95
VPS50-219ENST00000495039 SLC51AQ86UW1 340 aa9.11□□□□□ -0.95
VPS50-219ENST00000495039 DZIP1LQ8IYY4 767 aaKnown RBP9.11□□□□□ -0.95
VPS50-219ENST00000495039 RGL4Q8IZJ4 473 aa9.11□□□□□ -0.95
VPS50-219ENST00000495039 CMTR1Q8N1G2 835 aaKnown RBP9.11□□□□□ -0.95
VPS50-219ENST00000495039 LRFN2Q9ULH4 789 aa9.11□□□□□ -0.95
VPS50-219ENST00000495039 SOX18P35713 384 aa9.1□□□□□ -0.95
VPS50-219ENST00000495039 GDF6Q6KF10 455 aaPredicted RBP9.1□□□□□ -0.95
VPS50-219ENST00000495039 TREML1Q86YW5 311 aa9.1□□□□□ -0.95
VPS50-219ENST00000495039 KRTAP1-3Q8IUG1 177 aa9.1□□□□□ -0.95
VPS50-219ENST00000495039 MAP4K3Q8IVH8 894 aa9.1□□□□□ -0.95
VPS50-219ENST00000495039 TMEM130Q8N3G9 435 aa9.1□□□□□ -0.95
VPS50-219ENST00000495039 FAM200AQ8TCP9 573 aa9.1□□□□□ -0.95
VPS50-219ENST00000495039 NSUN5Q96P11 429 aaKnown RBP9.1□□□□□ -0.95
VPS50-219ENST00000495039 J3QW42 95 aa9.09□□□□□ -0.95
VPS50-219ENST00000495039 HOXD8P13378 290 aaPredicted RBP9.09□□□□□ -0.95
VPS50-219ENST00000495039 IL22RA1Q8N6P7 574 aa9.09□□□□□ -0.95
VPS50-219ENST00000495039 KRTAP4-12Q9BQ66 201 aa9.09□□□□□ -0.95
VPS50-219ENST00000495039 A6NJR5 290 aa9.08□□□□□ -0.96
VPS50-219ENST00000495039 F8W735 103 aaPredicted RBP9.08□□□□□ -0.96
VPS50-219ENST00000495039 MMP20O60882 483 aa9.08□□□□□ -0.96
VPS50-219ENST00000495039 FSTP19883 344 aa9.08□□□□□ -0.96
VPS50-219ENST00000495039 KCNMB2Q9Y691 235 aa9.08□□□□□ -0.96
VPS50-219ENST00000495039 ALX3O95076 343 aa9.07□□□□□ -0.96
VPS50-219ENST00000495039 PCMTD2Q9NV79 361 aa9.07□□□□□ -0.96
VPS50-219ENST00000495039 COX20Q5RI15 118 aa9.06□□□□□ -0.96
VPS50-219ENST00000495039 CACTIN-AS1Q8N1I8 211 aa9.06□□□□□ -0.96
VPS50-219ENST00000495039 FKBP5Q13451 457 aaPredicted RBP9.05□□□□□ -0.96
VPS50-219ENST00000495039 SETDB1Q15047 1291 aa9.05□□□□□ -0.96
VPS50-219ENST00000495039 LCE3BQ5TA77 95 aa9.05□□□□□ -0.96
VPS50-219ENST00000495039 Q6ZS46 218 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms