RNA–Protein interactions for RNA: ENST00000487674.1

PRKCB-208, Transcript of protein kinase C beta, human

TSL 2

Gene PRKCB, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCB-208	ENST00000487674	HSPA1A	P0DMV8	641 aa	Known RBP	11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	HSPA1B	P0DMV9	641 aa	Known RBP	11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	RIPK4	P57078	832 aa		11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	SUSD4	Q5VX71	490 aa		11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	LRP10	Q7Z4F1	713 aa		11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	PPP1R42	Q7Z4L9	355 aa		11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	GPC2	Q8N158	579 aa		11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	SYNE4	Q8N205	404 aa		11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	JDP2	Q8WYK2	163 aa		11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	CRAMP1	Q96RY5	1269 aa		11.21	□□□□□ -0.61
PRKCB-208	ENST00000487674	LAMB2	P55268	1798 aa		11.21	□□□□□ -0.62
PRKCB-208	ENST00000487674	CNTNAP1	P78357	1384 aa		11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	PPEF1	O14829	653 aa	Predicted RBP	11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	EPHX2	P34913	555 aa		11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	TMPO	P42166	694 aa	Known RBP	11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	PDIA6	Q15084	440 aa		11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	EAPP	Q56P03	285 aa	Predicted RBP	11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	PNMA8A	Q86V59	439 aa	Predicted RBP	11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	RBM17	Q96I25	401 aa	Known RBP	11.2	□□□□□ -0.62
PRKCB-208	ENST00000487674	PCNT	O95613	3336 aa		11.19	□□□□□ -0.62
PRKCB-208	ENST00000487674	LTBP1	Q14766	1721 aa		11.19	□□□□□ -0.62
PRKCB-208	ENST00000487674	EIF2S2	P20042	333 aa	Known RBP	11.19	□□□□□ -0.62
PRKCB-208	ENST00000487674	PROSER3	Q2NL68	480 aa		11.19	□□□□□ -0.62
PRKCB-208	ENST00000487674	C3orf67	Q6ZVT6	689 aa		11.19	□□□□□ -0.62
PRKCB-208	ENST00000487674	MKRN1	Q9UHC7	482 aa	Known RBP	11.19	□□□□□ -0.62
PRKCB-208	ENST00000487674	ITGBL1	O95965	494 aa	Predicted RBP	11.18	□□□□□ -0.62
PRKCB-208	ENST00000487674	PYGB	P11216	843 aa		11.18	□□□□□ -0.62
PRKCB-208	ENST00000487674	EIF6	P56537	245 aa	Known RBP	11.18	□□□□□ -0.62
PRKCB-208	ENST00000487674	HSP90AB3P	Q58FF7	597 aa		11.18	□□□□□ -0.62
PRKCB-208	ENST00000487674	DCAF8	Q5TAQ9	597 aa		11.18	□□□□□ -0.62
PRKCB-208	ENST00000487674	NLRP3	Q96P20	1036 aa		11.18	□□□□□ -0.62
PRKCB-208	ENST00000487674	UTP14A	Q9BVJ6	771 aa	Known RBP	11.18	□□□□□ -0.62
PRKCB-208	ENST00000487674	TMEM88B	A6NKF7	163 aa		11.17	□□□□□ -0.62
PRKCB-208	ENST00000487674	ANXA1	P04083	346 aa		11.17	□□□□□ -0.62
PRKCB-208	ENST00000487674	VASP	P50552	380 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKCB-208	ENST00000487674	SLC10A5	Q5PT55	438 aa		11.17	□□□□□ -0.62
PRKCB-208	ENST00000487674	TNS4	Q8IZW8	715 aa		11.17	□□□□□ -0.62
PRKCB-208	ENST00000487674	LARGE2	Q8N3Y3	721 aa		11.17	□□□□□ -0.62
PRKCB-208	ENST00000487674	TMX4	Q9H1E5	349 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKCB-208	ENST00000487674	LRRC37A	A6NMS7	1700 aa		11.17	□□□□□ -0.62
PRKCB-208	ENST00000487674	ABCC4	O15439	1325 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	CHL1	O00533	1208 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	LMOD1	P29536	600 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	SLC51A	Q86UW1	340 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	NLRP10	Q86W26	655 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	NIM1K	Q8IY84	436 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	CCDC146	Q8IYE0	955 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	XAGE3	Q8WTP9	111 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	ATP6V0A2	Q9Y487	856 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	GJA3	Q9Y6H8	435 aa		11.16	□□□□□ -0.62
PRKCB-208	ENST00000487674	DDX60	Q8IY21	1712 aa	Known RBP	11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	TCERG1	O14776	1098 aa	Known RBP	11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	PPIP5K2	O43314	1243 aa		11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	HOXB7	P09629	217 aa		11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	SCNN1D	P51172	638 aa		11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	IRX5	P78411	483 aa	Predicted RBP	11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	WDR43	Q15061	677 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	MAP1S	Q66K74	1059 aa	Predicted RBP	11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	COPS6	Q7L5N1	327 aa		11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	CNTROB	Q8N137	903 aa		11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	SLAIN1	Q8ND83	568 aa		11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	RUNDC1	Q96C34	613 aa		11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	VPS33B	Q9H267	617 aa		11.15	□□□□□ -0.62
PRKCB-208	ENST00000487674	SH3TC1	Q8TE82	1336 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	THSD7B	Q9C0I4	1608 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	PLCG2	P16885	1265 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	AIMP1	Q12904	312 aa	Known RBP	11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	DDX10	Q13206	875 aa	Known RBP	11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	TCIRG1	Q13488	830 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	NEUROD2	Q15784	382 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	AOC3	Q16853	763 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	KRT24	Q2M2I5	525 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	SUPT20H	Q8NEM7	779 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	NECTIN2	Q92692	538 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	CHPF2	Q9P2E5	772 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	DUOX1	Q9NRD9	1551 aa		11.14	□□□□□ -0.63
PRKCB-208	ENST00000487674	TRPM7	Q96QT4	1865 aa		11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	RASSF10	A6NK89	507 aa		11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	BBOX1	O75936	387 aa		11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	HCLS1	P14317	486 aa	Predicted RBP	11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	VEGFB	P49765	207 aa		11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	HDGFL1	Q5TGJ6	251 aa		11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	USP50	Q70EL3	339 aa	Predicted RBP	11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	TRMT112	Q9UI30	125 aa	Known RBP	11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	PCDHB8	Q9UN66	801 aa		11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	LAS1L	Q9Y4W2	734 aa	Known RBP	11.13	□□□□□ -0.63
PRKCB-208	ENST00000487674	EPS15	P42566	896 aa		11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	GRAP	Q13588	217 aa		11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	DPP8	Q6V1X1	898 aa	Predicted RBP	11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	DDX46	Q7L014	1031 aa	Known RBP	11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	TMC4	Q7Z404	712 aa		11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	SP8	Q8IXZ3	490 aa		11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	PLBD2	Q8NHP8	589 aa		11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	GRAPL	Q8TC17	118 aa	Predicted RBP	11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	AIDA	Q96BJ3	306 aa		11.12	□□□□□ -0.63
PRKCB-208	ENST00000487674	GPRC5D	Q9NZD1	345 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms