RNA–Protein interactions for RNA: ENST00000487674.1

PRKCB-208, Transcript of protein kinase C beta, humanhuman

TSL 2

Gene PRKCB, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-208ENST00000487674 AEBP2Q6ZN18 517 aaPredicted RBP24.08■■□□□ 1.45
PRKCB-208ENST00000487674 CHIC1Q5VXU3 224 aa22.62■■□□□ 1.21
PRKCB-208ENST00000487674 NISCHQ9Y2I1 1504 aa21.51■■□□□ 1.03
PRKCB-208ENST00000487674 SENP3Q9H4L4 574 aaPredicted RBP20.48■□□□□ 0.87
PRKCB-208ENST00000487674 PHF23Q9BUL5 403 aaPredicted RBP20.24■□□□□ 0.83
PRKCB-208ENST00000487674 CCDC180Q9P1Z9 1646 aa19.38■□□□□ 0.69
PRKCB-208ENST00000487674 ABCC9O60706 1549 aa19.28■□□□□ 0.68
PRKCB-208ENST00000487674 FOXD1Q16676 465 aa19.18■□□□□ 0.66
PRKCB-208ENST00000487674 RB1CC1Q8TDY2 1594 aa18.41■□□□□ 0.54
PRKCB-208ENST00000487674 NACADO15069 1562 aa18.28■□□□□ 0.52
PRKCB-208ENST00000487674 MYO15BQ96JP2 1530 aa18.05■□□□□ 0.48
PRKCB-208ENST00000487674 DCAF8L2P0C7V8 631 aa18.03■□□□□ 0.48
PRKCB-208ENST00000487674 DNAJC5BQ9UF47 199 aa18.01■□□□□ 0.47
PRKCB-208ENST00000487674 UNC13AQ9UPW8 1703 aa18■□□□□ 0.47
PRKCB-208ENST00000487674 PLPPR3Q6T4P5 718 aa17.96■□□□□ 0.47
PRKCB-208ENST00000487674 MSH5O43196 834 aa17.95■□□□□ 0.46
PRKCB-208ENST00000487674 POTEDQ86YR6 584 aa17.92■□□□□ 0.46
PRKCB-208ENST00000487674 PABPN1Q86U42 306 aaKnown RBP eCLIP17.89■□□□□ 0.45
PRKCB-208ENST00000487674 ZCCHC6Q5VYS8 1495 aaKnown RBP17.86■□□□□ 0.45
PRKCB-208ENST00000487674 BICRAQ9NZM4 1560 aa17.85■□□□□ 0.45
PRKCB-208ENST00000487674 PIAS4Q8N2W9 510 aaPredicted RBP17.84■□□□□ 0.45
PRKCB-208ENST00000487674 PPP6R1Q9UPN7 881 aa17.82■□□□□ 0.44
PRKCB-208ENST00000487674 DCAF1Q9Y4B6 1507 aa17.81■□□□□ 0.44
PRKCB-208ENST00000487674 ADRA2BP18089 450 aa17.74■□□□□ 0.43
PRKCB-208ENST00000487674 SHROOM4Q9ULL8 1493 aa17.68■□□□□ 0.42
PRKCB-208ENST00000487674 SCRIBQ14160 1630 aa17.6■□□□□ 0.41
PRKCB-208ENST00000487674 CC2D2AQ9P2K1 1620 aa17.45■□□□□ 0.38
PRKCB-208ENST00000487674 EIF4G1Q04637 1599 aaKnown RBP17.42■□□□□ 0.38
PRKCB-208ENST00000487674 CECR2Q9BXF3 1484 aa17.38■□□□□ 0.37
PRKCB-208ENST00000487674 NCAPD3P42695 1498 aa16.85■□□□□ 0.29
PRKCB-208ENST00000487674 SMARCA4P51532 1647 aa16.81■□□□□ 0.28
PRKCB-208ENST00000487674 ATAD2BQ9ULI0 1458 aa16.8■□□□□ 0.28
PRKCB-208ENST00000487674 SMARCA2P51531 1590 aa16.78■□□□□ 0.28
PRKCB-208ENST00000487674 HMGXB3Q12766 1538 aa16.77■□□□□ 0.28
PRKCB-208ENST00000487674 BAZ1AQ9NRL2 1556 aaPredicted RBP16.72■□□□□ 0.27
PRKCB-208ENST00000487674 PEG3Q9GZU2 1588 aa16.67■□□□□ 0.26
PRKCB-208ENST00000487674 CUX2O14529 1486 aa16.67■□□□□ 0.26
PRKCB-208ENST00000487674 ERCC6Q03468 1493 aa16.67■□□□□ 0.26
PRKCB-208ENST00000487674 BAZ1BQ9UIG0 1483 aaKnown RBP16.64■□□□□ 0.25
PRKCB-208ENST00000487674 DNAJC5Q9H3Z4 198 aa16.57■□□□□ 0.24
PRKCB-208ENST00000487674 MROH2BQ7Z745 1585 aa16.56■□□□□ 0.24
PRKCB-208ENST00000487674 NESP48681 1621 aa16.56■□□□□ 0.24
PRKCB-208ENST00000487674 LAMC3Q9Y6N6 1575 aa16.5■□□□□ 0.23
PRKCB-208ENST00000487674 THOC2Q8NI27 1593 aaKnown RBP16.46■□□□□ 0.23
PRKCB-208ENST00000487674 KIF21AQ7Z4S6 1674 aa16.4■□□□□ 0.22
PRKCB-208ENST00000487674 MAPK8IP2Q13387 824 aaPredicted RBP16.38■□□□□ 0.21
PRKCB-208ENST00000487674 WIZO95785 1651 aa16.37■□□□□ 0.21
PRKCB-208ENST00000487674 PDS5BQ9NTI5 1447 aa16.36■□□□□ 0.21
PRKCB-208ENST00000487674 CADPSQ9ULU8 1353 aa16.31■□□□□ 0.2
PRKCB-208ENST00000487674 MRC2Q9UBG0 1479 aa16.25■□□□□ 0.19
PRKCB-208ENST00000487674 DMRT2Q9Y5R5 561 aa16.24■□□□□ 0.19
PRKCB-208ENST00000487674 WDR62O43379 1518 aa16.23■□□□□ 0.19
PRKCB-208ENST00000487674 RSF1Q96T23 1441 aaPredicted RBP16.2■□□□□ 0.18
PRKCB-208ENST00000487674 TOP2AP11388 1531 aaKnown RBP16.2■□□□□ 0.18
PRKCB-208ENST00000487674 CEP164Q9UPV0 1460 aa16.18■□□□□ 0.18
PRKCB-208ENST00000487674 CFTRP13569 1480 aa16.16■□□□□ 0.18
PRKCB-208ENST00000487674 FANCD2Q9BXW9 1451 aa16.15■□□□□ 0.18
PRKCB-208ENST00000487674 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
PRKCB-208ENST00000487674 PRDM2Q13029 1718 aa16.07■□□□□ 0.16
PRKCB-208ENST00000487674 URB2Q14146 1524 aaKnown RBP16.02■□□□□ 0.15
PRKCB-208ENST00000487674 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
PRKCB-208ENST00000487674 IFT140Q96RY7 1462 aa15.85■□□□□ 0.13
PRKCB-208ENST00000487674 TOPBP1Q92547 1522 aa15.85■□□□□ 0.13
PRKCB-208ENST00000487674 ABCC8Q09428 1581 aa15.83■□□□□ 0.12
PRKCB-208ENST00000487674 OSCARQ8IYS5 282 aa15.82■□□□□ 0.12
PRKCB-208ENST00000487674 TRIM41Q8WV44 630 aa15.82■□□□□ 0.12
PRKCB-208ENST00000487674 DNMBPQ6XZF7 1577 aa15.82■□□□□ 0.12
PRKCB-208ENST00000487674 ZNF608Q9ULD9 1512 aaPredicted RBP15.8■□□□□ 0.12
PRKCB-208ENST00000487674 EIF4G3O43432 1585 aaKnown RBP15.77■□□□□ 0.11
PRKCB-208ENST00000487674 PPP4R3CPQ6ZMV5 832 aa15.76■□□□□ 0.11
PRKCB-208ENST00000487674 TARBP1Q13395 1621 aaKnown RBP15.72■□□□□ 0.11
PRKCB-208ENST00000487674 POLA1P09884 1462 aaPredicted RBP15.69■□□□□ 0.1
PRKCB-208ENST00000487674 RIMBP3CA6NJZ7 1639 aa15.68■□□□□ 0.1
PRKCB-208ENST00000487674 RIMBP3BA6NNM3 1639 aa15.68■□□□□ 0.1
PRKCB-208ENST00000487674 RIMBP3Q9UFD9 1639 aa15.68■□□□□ 0.1
PRKCB-208ENST00000487674 CHD1O14646 1710 aa15.65■□□□□ 0.1
PRKCB-208ENST00000487674 AQRO60306 1485 aaKnown RBP eCLIP15.64■□□□□ 0.091e-6■■■■■ 30.6
PRKCB-208ENST00000487674 ARHGEF11O15085 1522 aa15.63■□□□□ 0.09
PRKCB-208ENST00000487674 WDR97A6NE52 1622 aa15.61■□□□□ 0.09
PRKCB-208ENST00000487674 RAD54L2Q9Y4B4 1467 aa15.59■□□□□ 0.09
PRKCB-208ENST00000487674 DCAF8L1A6NGE4 600 aa15.59■□□□□ 0.09
PRKCB-208ENST00000487674 FGD5Q6ZNL6 1462 aa15.59■□□□□ 0.09
PRKCB-208ENST00000487674 SOGA1O94964 1423 aa15.58■□□□□ 0.08
PRKCB-208ENST00000487674 CUX1P39880 1505 aa15.58■□□□□ 0.08
PRKCB-208ENST00000487674 HOXD11P31277 338 aaPredicted RBP15.56■□□□□ 0.08
PRKCB-208ENST00000487674 CACNB1Q02641 598 aaPredicted RBP15.56■□□□□ 0.08
PRKCB-208ENST00000487674 TDRD9Q8NDG6 1382 aaKnown RBP15.53■□□□□ 0.08
PRKCB-208ENST00000487674 SNAPC4Q5SXM2 1469 aa15.52■□□□□ 0.07
PRKCB-208ENST00000487674 MAGI1Q96QZ7 1491 aaPredicted RBP15.5■□□□□ 0.07
PRKCB-208ENST00000487674 FBLN2P98095 1184 aa15.49■□□□□ 0.07
PRKCB-208ENST00000487674 GRIN2BQ13224 1484 aa15.48■□□□□ 0.07
PRKCB-208ENST00000487674 CNKSR2Q8WXI2 1034 aa15.48■□□□□ 0.07
PRKCB-208ENST00000487674 ARAP1Q96P48 1450 aa15.47■□□□□ 0.07
PRKCB-208ENST00000487674 CLASP1Q7Z460 1538 aa15.47■□□□□ 0.07
PRKCB-208ENST00000487674 PBRM1Q86U86 1689 aa15.46■□□□□ 0.07
PRKCB-208ENST00000487674 SYNJ1O43426 1573 aa15.45■□□□□ 0.06
PRKCB-208ENST00000487674 SYNJ2O15056 1496 aa15.44■□□□□ 0.06
PRKCB-208ENST00000487674 CYB5RLQ6IPT4 315 aa15.43■□□□□ 0.06
PRKCB-208ENST00000487674 ABCA5Q8WWZ7 1642 aa15.43■□□□□ 0.06
PRKCB-208ENST00000487674 ABCA10Q8WWZ4 1543 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms