RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 PDE8AO60658 829 aa15.56■□□□□ 0.08
PTPRF-213ENST00000481019 LMNB1P20700 586 aa15.56■□□□□ 0.08
PTPRF-213ENST00000481019 GRAPQ13588 217 aa15.56■□□□□ 0.08
PTPRF-213ENST00000481019 SLC4A10Q6U841 1118 aa15.56■□□□□ 0.08
PTPRF-213ENST00000481019 GRAPLQ8TC17 118 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-213ENST00000481019 ZNF277Q9NRM2 450 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-213ENST00000481019 COL4A5P29400 1685 aa15.56■□□□□ 0.08
PTPRF-213ENST00000481019 TIAM2Q8IVF5 1701 aa15.56■□□□□ 0.08
PTPRF-213ENST00000481019 LTBP3Q9NS15 1303 aa15.55■□□□□ 0.08
PTPRF-213ENST00000481019 DDX46Q7L014 1031 aaKnown RBP15.55■□□□□ 0.08
PTPRF-213ENST00000481019 TAOK3Q9H2K8 898 aa15.55■□□□□ 0.08
PTPRF-213ENST00000481019 NOB1Q9ULX3 412 aaKnown RBP15.55■□□□□ 0.08
PTPRF-213ENST00000481019 LRRC37AA6NMS7 1700 aa15.54■□□□□ 0.08
PTPRF-213ENST00000481019 BCAR3O75815 825 aa15.54■□□□□ 0.08
PTPRF-213ENST00000481019 CT47B1P0C2W7 299 aaPredicted RBP15.54■□□□□ 0.08
PTPRF-213ENST00000481019 CTSWP56202 376 aa15.54■□□□□ 0.08
PTPRF-213ENST00000481019 FKBP4Q02790 459 aaKnown RBP eCLIP15.54■□□□□ 0.08
PTPRF-213ENST00000481019 EPHA10Q5JZY3 1008 aa15.54■□□□□ 0.08
PTPRF-213ENST00000481019 SOGA3Q5TF21 947 aa15.54■□□□□ 0.08
PTPRF-213ENST00000481019 TTLL11Q8NHH1 800 aa15.54■□□□□ 0.08
PTPRF-213ENST00000481019 TNNQ9UQP3 1299 aa15.54■□□□□ 0.08
PTPRF-213ENST00000481019 ATP6V0A2Q9Y487 856 aa15.54■□□□□ 0.08
PTPRF-213ENST00000481019 DICER1Q9UPY3 1922 aaKnown RBP15.54■□□□□ 0.08
PTPRF-213ENST00000481019 MYH3P11055 1940 aa15.53■□□□□ 0.08
PTPRF-213ENST00000481019 PTPRCP08575 1304 aa15.53■□□□□ 0.08
PTPRF-213ENST00000481019 GREM2Q9H772 168 aa15.53■□□□□ 0.08
PTPRF-213ENST00000481019 DUOX1Q9NRD9 1551 aa15.53■□□□□ 0.08
PTPRF-213ENST00000481019 BBOX1O75936 387 aa15.52■□□□□ 0.08
PTPRF-213ENST00000481019 BRPF1P55201 1214 aaPredicted RBP15.52■□□□□ 0.08
PTPRF-213ENST00000481019 FOXO4P98177 505 aa15.52■□□□□ 0.08
PTPRF-213ENST00000481019 SP8Q8IXZ3 490 aa15.52■□□□□ 0.08
PTPRF-213ENST00000481019 RTKN2Q8IZC4 609 aa15.52■□□□□ 0.08
PTPRF-213ENST00000481019 PLA2G12BQ9BX93 195 aa15.52■□□□□ 0.08
PTPRF-213ENST00000481019 SRCIN1Q9C0H9 1055 aa15.52■□□□□ 0.08
PTPRF-213ENST00000481019 SPEF2Q9C093 1822 aa15.52■□□□□ 0.07
PTPRF-213ENST00000481019 GRM8O00222 908 aa15.51■□□□□ 0.07
PTPRF-213ENST00000481019 CCDC152Q4G0S7 254 aa15.51■□□□□ 0.07
PTPRF-213ENST00000481019 KAZALD1Q96I82 304 aa15.51■□□□□ 0.07
PTPRF-213ENST00000481019 PSMD1Q99460 953 aa15.51■□□□□ 0.07
PTPRF-213ENST00000481019 LTBP1Q14766 1721 aa15.51■□□□□ 0.07
PTPRF-213ENST00000481019 ALDH1L1O75891 902 aa15.5■□□□□ 0.07
PTPRF-213ENST00000481019 CSF1RP07333 972 aa15.5■□□□□ 0.07
PTPRF-213ENST00000481019 NBPF7P0C2Y1 421 aaPredicted RBP15.5■□□□□ 0.07
PTPRF-213ENST00000481019 RPS8P62241 208 aaKnown RBP15.5■□□□□ 0.07
PTPRF-213ENST00000481019 GPSM2P81274 684 aa15.5■□□□□ 0.07
PTPRF-213ENST00000481019 SUCLG2Q96I99 432 aa15.5■□□□□ 0.07
PTPRF-213ENST00000481019 WTIPA6NIX2 430 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-213ENST00000481019 IARSP41252 1262 aaKnown RBP15.49■□□□□ 0.07
PTPRF-213ENST00000481019 FAM161AQ3B820 660 aa15.49■□□□□ 0.07
PTPRF-213ENST00000481019 CC2D2BQ6DHV5 1058 aa15.49■□□□□ 0.07
PTPRF-213ENST00000481019 GPR101Q96P66 508 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-213ENST00000481019 NMRK2Q9NPI5 230 aa15.49■□□□□ 0.07
PTPRF-213ENST00000481019 RTL9Q8NET4 1388 aa15.49■□□□□ 0.07
PTPRF-213ENST00000481019 UTYO14607 1347 aa15.48■□□□□ 0.07
PTPRF-213ENST00000481019 MPNDQ8N594 471 aa15.48■□□□□ 0.07
PTPRF-213ENST00000481019 RTFDC1Q9BY42 306 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-213ENST00000481019 USP44Q9H0E7 712 aa15.48■□□□□ 0.07
PTPRF-213ENST00000481019 ZNF541Q9H0D2 1346 aa15.47■□□□□ 0.07
PTPRF-213ENST00000481019 HSP90B1P14625 803 aaKnown RBP15.47■□□□□ 0.07
PTPRF-213ENST00000481019 AOC3Q16853 763 aa15.47■□□□□ 0.07
PTPRF-213ENST00000481019 DPP8Q6V1X1 898 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-213ENST00000481019 GPBP1L1Q9HC44 474 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-213ENST00000481019 C9orf78Q9NZ63 289 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-213ENST00000481019 POLLQ9UGP5 575 aa15.47■□□□□ 0.07
PTPRF-213ENST00000481019 KIF3CO14782 793 aa15.46■□□□□ 0.07
PTPRF-213ENST00000481019 ITGA6P23229 1130 aa15.46■□□□□ 0.07
PTPRF-213ENST00000481019 LMBR1LQ6UX01 489 aa15.46■□□□□ 0.07
PTPRF-213ENST00000481019 ANKRD44Q8N8A2 993 aa15.46■□□□□ 0.07
PTPRF-213ENST00000481019 GLTPD2A6NH11 291 aa15.45■□□□□ 0.06
PTPRF-213ENST00000481019 POTECB2RU33 542 aa15.45■□□□□ 0.06
PTPRF-213ENST00000481019 TRIM27P14373 513 aa15.45■□□□□ 0.06
PTPRF-213ENST00000481019 TMC4Q7Z404 712 aa15.45■□□□□ 0.06
PTPRF-213ENST00000481019 ANKRD18AQ8IVF6 992 aa15.45■□□□□ 0.06
PTPRF-213ENST00000481019 FRAT1Q92837 279 aaPredicted RBP15.45■□□□□ 0.06
PTPRF-213ENST00000481019 ZNF594Q96JF6 807 aaPredicted RBP15.45■□□□□ 0.06
PTPRF-213ENST00000481019 API5Q9BZZ5 524 aaKnown RBP15.45■□□□□ 0.06
PTPRF-213ENST00000481019 NSFL1CQ9UNZ2 370 aaKnown RBP15.45■□□□□ 0.06
PTPRF-213ENST00000481019 ZC3H4Q9UPT8 1303 aaKnown RBP15.44■□□□□ 0.06
PTPRF-213ENST00000481019 FZD9O00144 591 aa15.44■□□□□ 0.06
PTPRF-213ENST00000481019 PPIP5K2O43314 1243 aa15.44■□□□□ 0.06
PTPRF-213ENST00000481019 DDNO94850 711 aaPredicted RBP15.44■□□□□ 0.06
PTPRF-213ENST00000481019 GRIPAP1Q4V328 841 aa15.44■□□□□ 0.06
PTPRF-213ENST00000481019 LARGE2Q8N3Y3 721 aa15.44■□□□□ 0.06
PTPRF-213ENST00000481019 ARHGAP45Q92619 1136 aa15.44■□□□□ 0.06
PTPRF-213ENST00000481019 BICC1Q9H694 974 aaKnown RBP15.44■□□□□ 0.06
PTPRF-213ENST00000481019 RRAGCQ9HB90 399 aa15.44■□□□□ 0.06
PTPRF-213ENST00000481019 KIF16BQ96L93 1317 aa15.43■□□□□ 0.06
PTPRF-213ENST00000481019 TBC1D16Q8TBP0 767 aa15.43■□□□□ 0.06
PTPRF-213ENST00000481019 CLUAP1Q96AJ1 413 aa15.43■□□□□ 0.06
PTPRF-213ENST00000481019 CDC5LQ99459 802 aaKnown RBP15.43■□□□□ 0.06
PTPRF-213ENST00000481019 BSDC1Q9NW68 430 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-213ENST00000481019 MINPP1Q9UNW1 487 aa15.43■□□□□ 0.06
PTPRF-213ENST00000481019 CHMP3Q9Y3E7 222 aa15.43■□□□□ 0.06
PTPRF-213ENST00000481019 WDR90Q96KV7 1748 aa15.43■□□□□ 0.06
PTPRF-213ENST00000481019 A0A1B0GUL6 1792 aa15.42■□□□□ 0.06
PTPRF-213ENST00000481019 RIMBP2O15034 1052 aa15.42■□□□□ 0.06
PTPRF-213ENST00000481019 CCT4P50991 539 aaKnown RBP15.42■□□□□ 0.06
PTPRF-213ENST00000481019 KIAA2012Q0VF49 1180 aa15.42■□□□□ 0.06
PTPRF-213ENST00000481019 INTS3Q68E01 1043 aaKnown RBP15.42■□□□□ 0.06
PTPRF-213ENST00000481019 ATF7IPQ6VMQ6 1270 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms