RNA–Protein interactions for RNA: ENST00000479051.1

VARS-224, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 612 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-224ENST00000479051 C9orf78Q9NZ63 289 aaPredicted RBP25.92■■□□□ 1.74
VARS-224ENST00000479051 IPO8O15397 1037 aaKnown RBP25.91■■□□□ 1.74
VARS-224ENST00000479051 TMC4Q7Z404 712 aa25.91■■□□□ 1.74
VARS-224ENST00000479051 UTRNP46939 3433 aa25.9■■□□□ 1.74
VARS-224ENST00000479051 GRM8O00222 908 aa25.9■■□□□ 1.74
VARS-224ENST00000479051 CTSWP56202 376 aa25.9■■□□□ 1.74
VARS-224ENST00000479051 RASSF7Q02833 373 aa25.9■■□□□ 1.74
VARS-224ENST00000479051 LTBP3Q9NS15 1303 aa25.89■■□□□ 1.74
VARS-224ENST00000479051 NFKBIEO00221 500 aa25.89■■□□□ 1.74
VARS-224ENST00000479051 LMNB1P20700 586 aa25.89■■□□□ 1.74
VARS-224ENST00000479051 C9orf131Q5VYM1 1079 aa25.89■■□□□ 1.74
VARS-224ENST00000479051 ARHGAP45Q92619 1136 aa25.89■■□□□ 1.74
VARS-224ENST00000479051 PLA2G12BQ9BX93 195 aa25.88■■□□□ 1.73
VARS-224ENST00000479051 RNF181Q9P0P0 153 aa25.88■■□□□ 1.73
VARS-224ENST00000479051 ATP6V0A2Q9Y487 856 aa25.88■■□□□ 1.73
VARS-224ENST00000479051 FER1L6Q2WGJ9 1857 aa25.87■■□□□ 1.73
VARS-224ENST00000479051 CCT4P50991 539 aaKnown RBP25.87■■□□□ 1.73
VARS-224ENST00000479051 CASP7P55210 303 aa25.87■■□□□ 1.73
VARS-224ENST00000479051 MYH3P11055 1940 aa25.86■■□□□ 1.73
VARS-224ENST00000479051 BCAR3O75815 825 aa25.86■■□□□ 1.73
VARS-224ENST00000479051 FKBP4Q02790 459 aaKnown RBP eCLIP25.86■■□□□ 1.73
VARS-224ENST00000479051 TTLL11Q8NHH1 800 aa25.86■■□□□ 1.73
VARS-224ENST00000479051 CCDC85AQ96PX6 553 aaPredicted RBP25.86■■□□□ 1.73
VARS-224ENST00000479051 OLFM4Q6UX06 510 aa25.85■■□□□ 1.73
VARS-224ENST00000479051 SP8Q8IXZ3 490 aa25.85■■□□□ 1.73
VARS-224ENST00000479051 FRAT1Q92837 279 aaPredicted RBP25.85■■□□□ 1.73
VARS-224ENST00000479051 CDC5LQ99459 802 aaKnown RBP25.85■■□□□ 1.73
VARS-224ENST00000479051 RPS8P62241 208 aaKnown RBP25.84■■□□□ 1.73
VARS-224ENST00000479051 CELF1Q92879 486 aaKnown RBP25.84■■□□□ 1.73
VARS-224ENST00000479051 RTL9Q8NET4 1388 aa25.83■■□□□ 1.73
VARS-224ENST00000479051 PSMD1Q99460 953 aa25.83■■□□□ 1.73
VARS-224ENST00000479051 SBF1O95248 1867 aa25.83■■□□□ 1.72
VARS-224ENST00000479051 ANKRD18AQ8IVF6 992 aa25.82■■□□□ 1.72
VARS-224ENST00000479051 SEC31BQ9NQW1 1179 aa25.82■■□□□ 1.72
VARS-224ENST00000479051 ZC3H4Q9UPT8 1303 aaKnown RBP25.82■■□□□ 1.72
VARS-224ENST00000479051 ZKSCAN2Q63HK3 967 aa25.81■■□□□ 1.72
VARS-224ENST00000479051 ATF7IPQ6VMQ6 1270 aa25.81■■□□□ 1.72
VARS-224ENST00000479051 YTHDC1Q96MU7 727 aaKnown RBP25.81■■□□□ 1.72
VARS-224ENST00000479051 GREM2Q9H772 168 aa25.81■■□□□ 1.72
VARS-224ENST00000479051 UTYO14607 1347 aa25.81■■□□□ 1.72
VARS-224ENST00000479051 CSF1RP07333 972 aa25.8■■□□□ 1.72
VARS-224ENST00000479051 DPP8Q6V1X1 898 aaPredicted RBP25.8■■□□□ 1.72
VARS-224ENST00000479051 MPNDQ8N594 471 aa25.8■■□□□ 1.72
VARS-224ENST00000479051 SUPT20HQ8NEM7 779 aa25.8■■□□□ 1.72
VARS-224ENST00000479051 TAF1P21675 1872 aa25.8■■□□□ 1.72
VARS-224ENST00000479051 ZNF277Q9NRM2 450 aaPredicted RBP25.79■■□□□ 1.72
VARS-224ENST00000479051 CHMP3Q9Y3E7 222 aa25.79■■□□□ 1.72
VARS-224ENST00000479051 SNED1Q8TER0 1413 aa25.79■■□□□ 1.72
VARS-224ENST00000479051 NBPF7P0C2Y1 421 aaPredicted RBP25.78■■□□□ 1.72
VARS-224ENST00000479051 TRIM27P14373 513 aa25.78■■□□□ 1.72
VARS-224ENST00000479051 ITGA6P23229 1130 aa25.78■■□□□ 1.72
VARS-224ENST00000479051 IGHMBP2P38935 993 aaKnown RBP25.78■■□□□ 1.72
VARS-224ENST00000479051 PRELPP51888 382 aa25.78■■□□□ 1.72
VARS-224ENST00000479051 FOXO4P98177 505 aa25.78■■□□□ 1.72
VARS-224ENST00000479051 FAM161AQ3B820 660 aa25.78■■□□□ 1.72
VARS-224ENST00000479051 ZNF784Q8NCA9 323 aaPredicted RBP25.78■■□□□ 1.72
VARS-224ENST00000479051 HDAC5Q9UQL6 1122 aa25.78■■□□□ 1.72
VARS-224ENST00000479051 CCDC88AQ3V6T2 1871 aa25.78■■□□□ 1.72
VARS-224ENST00000479051 ANKRD18BA2A2Z9 1011 aa25.77■■□□□ 1.72
VARS-224ENST00000479051 IARSP41252 1262 aaKnown RBP25.77■■□□□ 1.72
VARS-224ENST00000479051 USP44Q9H0E7 712 aa25.77■■□□□ 1.72
VARS-224ENST00000479051 IFIT5Q13325 482 aaKnown RBP25.76■■□□□ 1.71
VARS-224ENST00000479051 INTS3Q68E01 1043 aaKnown RBP25.76■■□□□ 1.71
VARS-224ENST00000479051 LMBR1LQ6UX01 489 aa25.76■■□□□ 1.71
VARS-224ENST00000479051 SUCLG2Q96I99 432 aa25.76■■□□□ 1.71
VARS-224ENST00000479051 LRRC37AA6NMS7 1700 aa25.76■■□□□ 1.71
VARS-224ENST00000479051 CCDC57Q2TAC2 916 aa25.75■■□□□ 1.71
VARS-224ENST00000479051 MPHOSPH8Q99549 860 aa25.75■■□□□ 1.71
VARS-224ENST00000479051 VPS33BQ9H267 617 aa25.75■■□□□ 1.71
VARS-224ENST00000479051 NSFL1CQ9UNZ2 370 aaKnown RBP25.75■■□□□ 1.71
VARS-224ENST00000479051 DICER1Q9UPY3 1922 aaKnown RBP25.75■■□□□ 1.71
VARS-224ENST00000479051 UBTFL1P0CB47 393 aaPredicted RBP25.74■■□□□ 1.71
VARS-224ENST00000479051 TAF7LQ5H9L4 462 aa25.74■■□□□ 1.71
VARS-224ENST00000479051 FTSJ3Q8IY81 847 aaKnown RBP25.74■■□□□ 1.71
VARS-224ENST00000479051 JDP2Q8WYK2 163 aa25.74■■□□□ 1.71
VARS-224ENST00000479051 CLUAP1Q96AJ1 413 aa25.74■■□□□ 1.71
VARS-224ENST00000479051 RTFDC1Q9BY42 306 aaPredicted RBP25.74■■□□□ 1.71
VARS-224ENST00000479051 BSDC1Q9NW68 430 aaPredicted RBP25.74■■□□□ 1.71
VARS-224ENST00000479051 RCAN3Q9UKA8 241 aa25.74■■□□□ 1.71
VARS-224ENST00000479051 TIAM2Q8IVF5 1701 aa25.74■■□□□ 1.71
VARS-224ENST00000479051 EPHA10Q5JZY3 1008 aa25.73■■□□□ 1.71
VARS-224ENST00000479051 SLC51AQ86UW1 340 aa25.73■■□□□ 1.71
VARS-224ENST00000479051 LARGE2Q8N3Y3 721 aa25.73■■□□□ 1.71
VARS-224ENST00000479051 GPBP1L1Q9HC44 474 aaPredicted RBP25.73■■□□□ 1.71
VARS-224ENST00000479051 ANKIB1Q9P2G1 1089 aa25.73■■□□□ 1.71
VARS-224ENST00000479051 KDM2BQ8NHM5 1336 aa25.72■■□□□ 1.71
VARS-224ENST00000479051 ZNF526Q8TF50 670 aaPredicted RBP25.72■■□□□ 1.71
VARS-224ENST00000479051 BICC1Q9H694 974 aaKnown RBP25.72■■□□□ 1.71
VARS-224ENST00000479051 COL4A1P02462 1669 aa25.71■■□□□ 1.71
VARS-224ENST00000479051 PPIP5K2O43314 1243 aa25.71■■□□□ 1.71
VARS-224ENST00000479051 GNAI3P08754 354 aa25.71■■□□□ 1.71
VARS-224ENST00000479051 GPSM2P81274 684 aa25.71■■□□□ 1.71
VARS-224ENST00000479051 DPY19L2Q6NUT2 758 aa25.71■■□□□ 1.71
VARS-224ENST00000479051 C6orf229H3BNL8 230 aa25.7■■□□□ 1.7
VARS-224ENST00000479051 MS4A1P11836 297 aa25.7■■□□□ 1.7
VARS-224ENST00000479051 DZIP1LQ8IYY4 767 aaKnown RBP25.7■■□□□ 1.7
VARS-224ENST00000479051 KAZALD1Q96I82 304 aa25.7■■□□□ 1.7
VARS-224ENST00000479051 EYA3Q99504 573 aa25.7■■□□□ 1.7
VARS-224ENST00000479051 PODXL2Q9NZ53 605 aa25.7■■□□□ 1.7
VARS-224ENST00000479051 XDHP47989 1333 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms