RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 CTSWP56202 376 aa21.43■■□□□ 1.02
SCAF11-206ENST00000474828 JARID2Q92833 1246 aaPredicted RBP21.43■■□□□ 1.02
SCAF11-206ENST00000474828 CHD4Q14839 1912 aa21.43■■□□□ 1.02
SCAF11-206ENST00000474828 FOXO4P98177 505 aa21.42■■□□□ 1.02
SCAF11-206ENST00000474828 SOGA3Q5TF21 947 aa21.42■■□□□ 1.02
SCAF11-206ENST00000474828 ZKSCAN2Q63HK3 967 aa21.42■■□□□ 1.02
SCAF11-206ENST00000474828 KAZALD1Q96I82 304 aa21.42■■□□□ 1.02
SCAF11-206ENST00000474828 RCAN3Q9UKA8 241 aa21.42■■□□□ 1.02
SCAF11-206ENST00000474828 LTBP3Q9NS15 1303 aa21.41■■□□□ 1.02
SCAF11-206ENST00000474828 NBPF7P0C2Y1 421 aaPredicted RBP21.41■■□□□ 1.02
SCAF11-206ENST00000474828 GRAPQ13588 217 aa21.41■■□□□ 1.02
SCAF11-206ENST00000474828 CCDC152Q4G0S7 254 aa21.41■■□□□ 1.02
SCAF11-206ENST00000474828 CC2D2BQ6DHV5 1058 aa21.41■■□□□ 1.02
SCAF11-206ENST00000474828 DDX46Q7L014 1031 aaKnown RBP21.41■■□□□ 1.02
SCAF11-206ENST00000474828 TMC4Q7Z404 712 aa21.41■■□□□ 1.02
SCAF11-206ENST00000474828 GRAPLQ8TC17 118 aaPredicted RBP21.41■■□□□ 1.02
SCAF11-206ENST00000474828 COL4A1P02462 1669 aa21.4■■□□□ 1.02
SCAF11-206ENST00000474828 GRIPAP1Q4V328 841 aa21.4■■□□□ 1.02
SCAF11-206ENST00000474828 WWC3Q9ULE0 1092 aa21.4■■□□□ 1.02
SCAF11-206ENST00000474828 MYH3P11055 1940 aa21.39■■□□□ 1.02
SCAF11-206ENST00000474828 FER1L6Q2WGJ9 1857 aa21.39■■□□□ 1.02
SCAF11-206ENST00000474828 LRRC37AA6NMS7 1700 aa21.39■■□□□ 1.01
SCAF11-206ENST00000474828 C21orf2O43822 256 aa21.39■■□□□ 1.01
SCAF11-206ENST00000474828 RABL6Q3YEC7 729 aaPredicted RBP21.39■■□□□ 1.01
SCAF11-206ENST00000474828 C9orf78Q9NZ63 289 aaPredicted RBP21.39■■□□□ 1.01
SCAF11-206ENST00000474828 ATP6V0A2Q9Y487 856 aa21.39■■□□□ 1.01
SCAF11-206ENST00000474828 NFKBIEO00221 500 aa21.38■■□□□ 1.01
SCAF11-206ENST00000474828 TNNQ9UQP3 1299 aa21.38■■□□□ 1.01
SCAF11-206ENST00000474828 PPEF1O14829 653 aaPredicted RBP21.37■■□□□ 1.01
SCAF11-206ENST00000474828 EPHA10Q5JZY3 1008 aa21.37■■□□□ 1.01
SCAF11-206ENST00000474828 SP8Q8IXZ3 490 aa21.37■■□□□ 1.01
SCAF11-206ENST00000474828 FRAT1Q92837 279 aaPredicted RBP21.37■■□□□ 1.01
SCAF11-206ENST00000474828 CELF1Q92879 486 aaKnown RBP21.37■■□□□ 1.01
SCAF11-206ENST00000474828 YTHDC1Q96MU7 727 aaKnown RBP21.37■■□□□ 1.01
SCAF11-206ENST00000474828 RPS8P62241 208 aaKnown RBP21.36■■□□□ 1.01
SCAF11-206ENST00000474828 CCDC93Q567U6 631 aa21.36■■□□□ 1.01
SCAF11-206ENST00000474828 RTKN2Q8IZC4 609 aa21.36■■□□□ 1.01
SCAF11-206ENST00000474828 GREM2Q9H772 168 aa21.36■■□□□ 1.01
SCAF11-206ENST00000474828 SEC31BQ9NQW1 1179 aa21.36■■□□□ 1.01
SCAF11-206ENST00000474828 CACNA1SQ13698 1873 aa21.35■■□□□ 1.01
SCAF11-206ENST00000474828 ARHGAP27Q6ZUM4 889 aa21.35■■□□□ 1.01
SCAF11-206ENST00000474828 SUCLG2Q96I99 432 aa21.35■■□□□ 1.01
SCAF11-206ENST00000474828 PSMD1Q99460 953 aa21.35■■□□□ 1.01
SCAF11-206ENST00000474828 PRELPP51888 382 aa21.34■■□□□ 1.01
SCAF11-206ENST00000474828 RTFDC1Q9BY42 306 aaPredicted RBP21.34■■□□□ 1.01
SCAF11-206ENST00000474828 TAF1P21675 1872 aa21.33■■□□□ 1.01
SCAF11-206ENST00000474828 LTBP1Q14766 1721 aa21.33■■□□□ 1.01
SCAF11-206ENST00000474828 RLBP1P12271 317 aa21.33■■□□□ 1.01
SCAF11-206ENST00000474828 OLFM4Q6UX06 510 aa21.33■■□□□ 1.01
SCAF11-206ENST00000474828 DZIP1LQ8IYY4 767 aaKnown RBP21.33■■□□□ 1.01
SCAF11-206ENST00000474828 TMEM57Q8N5G2 664 aa21.33■■□□□ 1.01
SCAF11-206ENST00000474828 ANKRD44Q8N8A2 993 aa21.33■■□□□ 1.01
SCAF11-206ENST00000474828 FKBP4Q02790 459 aaKnown RBP eCLIP21.32■■□□□ 1
SCAF11-206ENST00000474828 LMBR1LQ6UX01 489 aa21.32■■□□□ 1
SCAF11-206ENST00000474828 CDC5LQ99459 802 aaKnown RBP21.32■■□□□ 1
SCAF11-206ENST00000474828 SBF1O95248 1867 aa21.32■■□□□ 1
SCAF11-206ENST00000474828 MS4A1P11836 297 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 ITGA6P23229 1130 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 FAM161AQ3B820 660 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 SLC51AQ86UW1 340 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 CLUAP1Q96AJ1 413 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 MEIS3Q99687 375 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 TAOK3Q9H2K8 898 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 BICC1Q9H694 974 aaKnown RBP21.31■■□□□ 1
SCAF11-206ENST00000474828 BSDC1Q9NW68 430 aaPredicted RBP21.31■■□□□ 1
SCAF11-206ENST00000474828 PODXL2Q9NZ53 605 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 HDAC5Q9UQL6 1122 aa21.31■■□□□ 1
SCAF11-206ENST00000474828 GNAI3P08754 354 aa21.3■■□□□ 1
SCAF11-206ENST00000474828 LMNB1P20700 586 aa21.3■■□□□ 1
SCAF11-206ENST00000474828 VPS33BQ9H267 617 aa21.3■■□□□ 1
SCAF11-206ENST00000474828 DUOX1Q9NRD9 1551 aa21.3■■□□□ 1
SCAF11-206ENST00000474828 ZC3H4Q9UPT8 1303 aaKnown RBP21.29■■□□□ 1
SCAF11-206ENST00000474828 UBTFL1P0CB47 393 aaPredicted RBP21.29■■□□□ 1
SCAF11-206ENST00000474828 C1QTNF8P60827 252 aa21.29■■□□□ 1
SCAF11-206ENST00000474828 PDE3AQ14432 1141 aa21.29■■□□□ 1
SCAF11-206ENST00000474828 ANKRD18AQ8IVF6 992 aa21.29■■□□□ 1
SCAF11-206ENST00000474828 ZBTB7BO15156 539 aaPredicted RBP21.28■■□□□ 1
SCAF11-206ENST00000474828 RASSF7Q02833 373 aa21.28■■□□□ 1
SCAF11-206ENST00000474828 MTX1Q13505 466 aa21.28■■□□□ 1
SCAF11-206ENST00000474828 CCDC85AQ96PX6 553 aaPredicted RBP21.28■■□□□ 1
SCAF11-206ENST00000474828 ZNF219Q9P2Y4 722 aaPredicted RBP21.28■■□□□ 1
SCAF11-206ENST00000474828 ANKRD18BA2A2Z9 1011 aa21.27■■□□□ 1
SCAF11-206ENST00000474828 IFIT5Q13325 482 aaKnown RBP21.27■■□□□ 1
SCAF11-206ENST00000474828 FTSJ3Q8IY81 847 aaKnown RBP21.27■■□□□ 1
SCAF11-206ENST00000474828 RFX5P48382 616 aaPredicted RBP21.25■□□□□ 0.99
SCAF11-206ENST00000474828 C9orf131Q5VYM1 1079 aa21.25■□□□□ 0.99
SCAF11-206ENST00000474828 MPNDQ8N594 471 aa21.25■□□□□ 0.99
SCAF11-206ENST00000474828 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.25■□□□□ 0.99
SCAF11-206ENST00000474828 PANK1Q8TE04 598 aa21.25■□□□□ 0.99
SCAF11-206ENST00000474828 MINPP1Q9UNW1 487 aa21.25■□□□□ 0.99
SCAF11-206ENST00000474828 DICER1Q9UPY3 1922 aaKnown RBP21.25■□□□□ 0.99
SCAF11-206ENST00000474828 GPSM2P81274 684 aa21.24■□□□□ 0.99
SCAF11-206ENST00000474828 CCDC57Q2TAC2 916 aa21.24■□□□□ 0.99
SCAF11-206ENST00000474828 SUPT20HQ8NEM7 779 aa21.24■□□□□ 0.99
SCAF11-206ENST00000474828 TMX4Q9H1E5 349 aaPredicted RBP21.24■□□□□ 0.99
SCAF11-206ENST00000474828 LRRFIP2Q9Y608 721 aaKnown RBP21.24■□□□□ 0.99
SCAF11-206ENST00000474828 PLIN1O60240 522 aa21.23■□□□□ 0.99
SCAF11-206ENST00000474828 IGHMBP2P38935 993 aaKnown RBP21.23■□□□□ 0.99
SCAF11-206ENST00000474828 DPP8Q6V1X1 898 aaPredicted RBP21.23■□□□□ 0.99
SCAF11-206ENST00000474828 COL4A5P29400 1685 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms