RNA–Protein interactions for RNA: ENST00000455661.5

PTPRE-204, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 2,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-204ENST00000455661 CCAR2Q8N163 923 aaKnown RBP16.11■□□□□ 0.17
PTPRE-204ENST00000455661 TRMT1Q9NXH9 659 aaKnown RBP16.11■□□□□ 0.17
PTPRE-204ENST00000455661 GSDMDP57764 484 aa16.11■□□□□ 0.17
PTPRE-204ENST00000455661 ARID5BQ14865 1188 aa16.11■□□□□ 0.17
PTPRE-204ENST00000455661 SNRKQ9NRH2 765 aa16.11■□□□□ 0.17
PTPRE-204ENST00000455661 KCND1Q9NSA2 647 aa16.11■□□□□ 0.17
PTPRE-204ENST00000455661 RESTQ13127 1097 aa16.1■□□□□ 0.17
PTPRE-204ENST00000455661 C11orf57Q6ZUT1 292 aaPredicted RBP16.1■□□□□ 0.17
PTPRE-204ENST00000455661 TIGD1Q96MW7 591 aa16.1■□□□□ 0.17
PTPRE-204ENST00000455661 BMS1Q14692 1282 aaKnown RBP16.1■□□□□ 0.17
PTPRE-204ENST00000455661 ANO10Q9NW15 660 aa16.1■□□□□ 0.17
PTPRE-204ENST00000455661 CALCOCO1Q9P1Z2 691 aa16.1■□□□□ 0.17
PTPRE-204ENST00000455661 CCZ1BP86790 482 aa16.09■□□□□ 0.17
PTPRE-204ENST00000455661 CCZ1P86791 482 aaPredicted RBP16.09■□□□□ 0.17
PTPRE-204ENST00000455661 KRT32Q14532 448 aa16.09■□□□□ 0.17
PTPRE-204ENST00000455661 BRF1Q92994 677 aa16.09■□□□□ 0.17
PTPRE-204ENST00000455661 C9orf78Q9NZ63 289 aaPredicted RBP16.09■□□□□ 0.17
PTPRE-204ENST00000455661 USP16Q9Y5T5 823 aa16.09■□□□□ 0.17
PTPRE-204ENST00000455661 ROBO2Q9HCK4 1378 aa16.09■□□□□ 0.17
PTPRE-204ENST00000455661 TOPAZ1Q8N9V7 1692 aa16.09■□□□□ 0.17
PTPRE-204ENST00000455661 HOXB7P09629 217 aa16.08■□□□□ 0.17
PTPRE-204ENST00000455661 CDK11BP21127 795 aaKnown RBP16.08■□□□□ 0.17
PTPRE-204ENST00000455661 CCDC73Q6ZRK6 1079 aa16.08■□□□□ 0.17
PTPRE-204ENST00000455661 CCAR1Q8IX12 1150 aaKnown RBP16.08■□□□□ 0.17
PTPRE-204ENST00000455661 GTF3C6Q969F1 213 aa16.08■□□□□ 0.17
PTPRE-204ENST00000455661 FSD1Q9BTV5 496 aa16.08■□□□□ 0.17
PTPRE-204ENST00000455661 NAT10Q9H0A0 1025 aaKnown RBP16.08■□□□□ 0.17
PTPRE-204ENST00000455661 TMEM51Q9NW97 253 aa16.08■□□□□ 0.17
PTPRE-204ENST00000455661 CHPF2Q9P2E5 772 aa16.08■□□□□ 0.17
PTPRE-204ENST00000455661 TSGA10IPQ3SY00 556 aa16.08■□□□□ 0.16
PTPRE-204ENST00000455661 KINO60870 393 aaKnown RBP16.07■□□□□ 0.16
PTPRE-204ENST00000455661 SNW1Q13573 536 aaKnown RBP16.07■□□□□ 0.16
PTPRE-204ENST00000455661 CEP57L1Q8IYX8 460 aa16.07■□□□□ 0.16
PTPRE-204ENST00000455661 A0A0D9SFI3 127 aa16.07■□□□□ 0.16
PTPRE-204ENST00000455661 JAK2O60674 1132 aa16.07■□□□□ 0.16
PTPRE-204ENST00000455661 HSP90B1P14625 803 aaKnown RBP16.07■□□□□ 0.16
PTPRE-204ENST00000455661 GTF2E1P29083 439 aaPredicted RBP16.07■□□□□ 0.16
PTPRE-204ENST00000455661 G3BP1Q13283 466 aaKnown RBP eCLIP16.07■□□□□ 0.16
PTPRE-204ENST00000455661 IMPACTQ9P2X3 320 aa16.07■□□□□ 0.16
PTPRE-204ENST00000455661 PA2G4Q9UQ80 394 aaKnown RBP16.07■□□□□ 0.16
PTPRE-204ENST00000455661 NPHP4O75161 1426 aaPredicted RBP16.06■□□□□ 0.16
PTPRE-204ENST00000455661 CEBPZQ03701 1054 aaKnown RBP16.06■□□□□ 0.16
PTPRE-204ENST00000455661 COL9A3Q14050 684 aaPredicted RBP16.06■□□□□ 0.16
PTPRE-204ENST00000455661 NOL10Q9BSC4 688 aaKnown RBP16.06■□□□□ 0.16
PTPRE-204ENST00000455661 NRDCO43847 1150 aa16.06■□□□□ 0.16
PTPRE-204ENST00000455661 ALDH1L1O75891 902 aa16.06■□□□□ 0.16
PTPRE-204ENST00000455661 TUBB4AP04350 444 aa16.06■□□□□ 0.16
PTPRE-204ENST00000455661 EIF4A1P60842 406 aaKnown RBP16.06■□□□□ 0.16
PTPRE-204ENST00000455661 DHX8Q14562 1220 aaKnown RBP16.06■□□□□ 0.16
PTPRE-204ENST00000455661 DHX40Q8IX18 779 aaKnown RBP16.06■□□□□ 0.16
PTPRE-204ENST00000455661 DDX11Q96FC9 970 aa16.06■□□□□ 0.16
PTPRE-204ENST00000455661 ERICH4A6NGS2 130 aa16.05■□□□□ 0.16
PTPRE-204ENST00000455661 RCOR1Q9UKL0 485 aa16.05■□□□□ 0.16
PTPRE-204ENST00000455661 NPHP1O15259 732 aa16.05■□□□□ 0.16
PTPRE-204ENST00000455661 NEK1Q96PY6 1258 aa16.05■□□□□ 0.16
PTPRE-204ENST00000455661 CCDC8Q9H0W5 538 aaPredicted RBP16.05■□□□□ 0.16
PTPRE-204ENST00000455661 PTPRUQ92729 1446 aa16.04■□□□□ 0.16
PTPRE-204ENST00000455661 ADCY9O60503 1353 aa16.04■□□□□ 0.16
PTPRE-204ENST00000455661 MED23Q9ULK4 1368 aa16.04■□□□□ 0.16
PTPRE-204ENST00000455661 CCDC150Q8NCX0 1101 aa16.04■□□□□ 0.16
PTPRE-204ENST00000455661 NGDNQ8NEJ9 315 aaKnown RBP16.04■□□□□ 0.16
PTPRE-204ENST00000455661 ZNF396Q96N95 335 aaPredicted RBP16.04■□□□□ 0.16
PTPRE-204ENST00000455661 OSBPL5Q9H0X9 879 aaPredicted RBP16.04■□□□□ 0.16
PTPRE-204ENST00000455661 BOLA2Q9H3K6 86 aa16.04■□□□□ 0.16
PTPRE-204ENST00000455661 L2HGDHQ9H9P8 463 aa16.04■□□□□ 0.16
PTPRE-204ENST00000455661 TAF6LQ9Y6J9 622 aa16.04■□□□□ 0.16
PTPRE-204ENST00000455661 H2AFXP16104 143 aaPredicted RBP16.03■□□□□ 0.16
PTPRE-204ENST00000455661 FAM160A1Q05DH4 1040 aa16.03■□□□□ 0.16
PTPRE-204ENST00000455661 ATL3Q6DD88 541 aa16.03■□□□□ 0.16
PTPRE-204ENST00000455661 Q6ZUG5 572 aa16.03■□□□□ 0.16
PTPRE-204ENST00000455661 AOPEPQ8N6M6 819 aa16.03■□□□□ 0.16
PTPRE-204ENST00000455661 EAF2Q96CJ1 260 aaPredicted RBP16.03■□□□□ 0.16
PTPRE-204ENST00000455661 ZNF446Q9NWS9 450 aa16.03■□□□□ 0.16
PTPRE-204ENST00000455661 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.03■□□□□ 0.16
PTPRE-204ENST00000455661 HOXC9P31274 260 aa16.03■□□□□ 0.16
PTPRE-204ENST00000455661 ZRSR1Q15695 479 aaKnown RBP16.03■□□□□ 0.16
PTPRE-204ENST00000455661 NAA16Q6N069 864 aaPredicted RBP16.03■□□□□ 0.16
PTPRE-204ENST00000455661 LLPHQ9BRT6 129 aaKnown RBP16.03■□□□□ 0.16
PTPRE-204ENST00000455661 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.02■□□□□ 0.16
PTPRE-204ENST00000455661 PSDA5PKW4 1024 aaPredicted RBP16.02■□□□□ 0.16
PTPRE-204ENST00000455661 IRX5P78411 483 aaPredicted RBP16.02■□□□□ 0.16
PTPRE-204ENST00000455661 ERCC6LQ2NKX8 1250 aa16.02■□□□□ 0.16
PTPRE-204ENST00000455661 NUTM2GQ5VZR2 741 aa16.02■□□□□ 0.16
PTPRE-204ENST00000455661 GOLPH3LQ9H4A5 285 aa16.02■□□□□ 0.16
PTPRE-204ENST00000455661 ARGLU1Q9NWB6 273 aaPredicted RBP16.02■□□□□ 0.16
PTPRE-204ENST00000455661 MAP3K2Q9Y2U5 619 aa16.02■□□□□ 0.16
PTPRE-204ENST00000455661 AGLP35573 1532 aa16.02■□□□□ 0.16
PTPRE-204ENST00000455661 TAF5LO75529 589 aa16.02■□□□□ 0.15
PTPRE-204ENST00000455661 SASH1O94885 1247 aa16.02■□□□□ 0.15
PTPRE-204ENST00000455661 USPL1Q5W0Q7 1092 aa16.02■□□□□ 0.15
PTPRE-204ENST00000455661 LTV1Q96GA3 475 aaPredicted RBP16.02■□□□□ 0.15
PTPRE-204ENST00000455661 DBF4Q9UBU7 674 aaPredicted RBP16.02■□□□□ 0.15
PTPRE-204ENST00000455661 JCADQ9P266 1359 aa16.02■□□□□ 0.15
PTPRE-204ENST00000455661 ERBB3P21860 1342 aa16.02■□□□□ 0.15
PTPRE-204ENST00000455661 ANXA1P04083 346 aa16.01■□□□□ 0.15
PTPRE-204ENST00000455661 ADD1P35611 737 aaKnown RBP16.01■□□□□ 0.15
PTPRE-204ENST00000455661 NLRP6P59044 892 aa16.01■□□□□ 0.15
PTPRE-204ENST00000455661 TPM4P67936 248 aa16.01■□□□□ 0.15
PTPRE-204ENST00000455661 SYT10Q6XYQ8 523 aa16.01■□□□□ 0.15
PTPRE-204ENST00000455661 ZNF589Q86UQ0 364 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms