RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.27□□□□□ -1.89
LIG4-203ENST00000442234 SRP68Q9UHB9 627 aaKnown RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 HDAC9Q9UKV0 1011 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 TBC1D2BQ9UPU7 963 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 V9GYY5 206 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 C3P01024 1663 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 RIF1Q5UIP0 2472 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 PNPLA6Q8IY17 1366 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 EVI5O60447 810 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 KDM4AO75164 1064 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 PRPF40AO75400 957 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 YBX3P16989 372 aaKnown RBP eCLIP3.26□□□□□ -1.89
LIG4-203ENST00000442234 CYP2C19P33261 490 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 NF2P35240 595 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 RBM5P52756 815 aaKnown RBP eCLIP3.26□□□□□ -1.89
LIG4-203ENST00000442234 TRDNQ13061 729 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 PSMD2Q13200 908 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 ERFEQ4G0M1 354 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 JAKMIP3Q5VZ66 844 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 TYW1BQ6NUM6 668 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 HDGFL2Q7Z4V5 671 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 MICALL1Q8N3F8 863 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 JMYQ8N9B5 988 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 ITFG2Q969R8 447 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 MTFR1LQ9H019 292 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 BSDC1Q9NW68 430 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 MORC2Q9Y6X9 1032 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 GVINP1Q7Z2Y8 2422 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 IGSF1Q8N6C5 1336 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 CTAGE5O15320 804 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 C21orf2O43822 256 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 HSPA6P17066 643 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 SSFA2P28290 1259 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 FMR1Q06787 632 aaKnown RBP eCLIP3.26□□□□□ -1.89
LIG4-203ENST00000442234 NCBP1Q09161 790 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 SLC39A6Q13433 755 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 FKBP5Q13451 457 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 ZRSR2Q15696 482 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 TPD52L1Q16890 204 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 ZNF827Q17R98 1081 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 SKIDA1Q1XH10 827 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 NAIF1Q69YI7 327 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 CC2D2BQ6DHV5 1058 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 MARCH10Q8NA82 808 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 TTC13Q8NBP0 860 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 SPC24Q8NBT2 197 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 ACRBPQ8NEB7 543 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 ANKRD7Q92527 254 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 ERCC4Q92889 916 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 PDLIM2Q96JY6 352 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 FAM210AQ96ND0 272 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 MPHOSPH9Q99550 1183 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 USP25Q9UHP3 1055 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 ZDBF2Q9HCK1 2354 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 TESPA1A2RU30 521 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 TPD52L2O43399 206 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 IVLP07476 585 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 TATP17735 454 aaPredicted RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 ZNF445P59923 1031 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 AIMP1Q12904 312 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 RBBP5Q15291 538 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 RPUSD2Q8IZ73 545 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 BCL2L13Q9BXK5 485 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 SPATS2LQ9NUQ6 558 aaKnown RBP3.26□□□□□ -1.89
LIG4-203ENST00000442234 POLKQ9UBT6 870 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 A2ML1A8K2U0 1454 aa3.26□□□□□ -1.89
LIG4-203ENST00000442234 ANKRD50Q9ULJ7 1429 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 LRPPRCP42704 1394 aaKnown RBP3.25□□□□□ -1.89
LIG4-203ENST00000442234 ROBO2Q9HCK4 1378 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 GPTP24298 496 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 IRX1P78414 480 aaPredicted RBP3.25□□□□□ -1.89
LIG4-203ENST00000442234 SF3A1Q15459 793 aaKnown RBP3.25□□□□□ -1.89
LIG4-203ENST00000442234 HSP90AB4PQ58FF6 505 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 FOXD4L5Q5VV16 416 aaPredicted RBP3.25□□□□□ -1.89
LIG4-203ENST00000442234 WWC2Q6AWC2 1192 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 TMCO3Q6UWJ1 677 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 MMS22LQ6ZRQ5 1243 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 RINLQ6ZS11 566 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 TMTC2Q8N394 836 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 FOXD4L4Q8WXT5 416 aaPredicted RBP3.25□□□□□ -1.89
LIG4-203ENST00000442234 CDCA7LQ96GN5 454 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 ST7Q9NRC1 585 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 TMOD3Q9NYL9 352 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 ANAPC4Q9UJX5 808 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 IQSEC2Q5JU85 1478 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 GCC2Q8IWJ2 1684 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 NOS1P29475 1434 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 ARAP3Q8WWN8 1544 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 SPATA31A3Q5VYP0 1347 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 SMTNL1A8MU46 457 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 BAG4O95429 457 aaKnown RBP3.25□□□□□ -1.89
LIG4-203ENST00000442234 EIF2S2P20042 333 aaKnown RBP3.25□□□□□ -1.89
LIG4-203ENST00000442234 MAGEA9P43362 315 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 LRSAM1Q6UWE0 723 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 SRLQ86TD4 932 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 FNBP4Q8N3X1 1017 aaPredicted RBP3.25□□□□□ -1.89
LIG4-203ENST00000442234 COG3Q96JB2 828 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 AXIN2Q9Y2T1 843 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 LRP6O75581 1613 aa3.25□□□□□ -1.89
LIG4-203ENST00000442234 TECPR2O15040 1411 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms