RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TOB2Q14106 344 aaPredicted RBP14.06□□□□□ -0.16
CD44-209ENST00000433892 ANKRD1Q15327 319 aa14.06□□□□□ -0.16
CD44-209ENST00000433892 TNNI3KQ59H18 835 aa14.06□□□□□ -0.16
CD44-209ENST00000433892 ZNF830Q96NB3 372 aaPredicted RBP14.06□□□□□ -0.16
CD44-209ENST00000433892 FPGT-TNNI3KV9GXZ4 949 aa14.06□□□□□ -0.16
CD44-209ENST00000433892 CYP27B1O15528 508 aa14.06□□□□□ -0.16
CD44-209ENST00000433892 ATP5JP18859 108 aa14.06□□□□□ -0.16
CD44-209ENST00000433892 CHRNA2Q15822 529 aa14.06□□□□□ -0.16
CD44-209ENST00000433892 FUCA2Q9BTY2 467 aa14.06□□□□□ -0.16
CD44-209ENST00000433892 CHMP3Q9Y3E7 222 aa14.06□□□□□ -0.16
CD44-209ENST00000433892 SCN11AQ9UI33 1791 aa14.05□□□□□ -0.16
CD44-209ENST00000433892 A0A087WZG4 1122 aa14.05□□□□□ -0.16
CD44-209ENST00000433892 TTC6Q86TZ1 520 aa14.05□□□□□ -0.16
CD44-209ENST00000433892 DNAJC2Q99543 621 aaKnown RBP14.05□□□□□ -0.16
CD44-209ENST00000433892 MRC1P22897 1456 aa14.05□□□□□ -0.16
CD44-209ENST00000433892 COL15A1P39059 1388 aa14.05□□□□□ -0.16
CD44-209ENST00000433892 PDCP20941 246 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 KRT85P78386 507 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 PLCB2Q00722 1185 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 CCDC129Q6ZRS4 1044 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 UBE2Q2Q8WVN8 375 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 DCAF5Q96JK2 942 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 FMNL2Q96PY5 1086 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 DBNDD2Q9BQY9 259 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.04□□□□□ -0.16
CD44-209ENST00000433892 HMG20BQ9P0W2 317 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 CCDC9Q9Y3X0 531 aaKnown RBP14.04□□□□□ -0.16
CD44-209ENST00000433892 TERF1P54274 439 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 SEC62Q99442 399 aaKnown RBP14.04□□□□□ -0.16
CD44-209ENST00000433892 JCADQ9P266 1359 aa14.04□□□□□ -0.16
CD44-209ENST00000433892 KDM4AO75164 1064 aa14.03□□□□□ -0.16
CD44-209ENST00000433892 KIAA2012Q0VF49 1180 aa14.03□□□□□ -0.16
CD44-209ENST00000433892 TSGA10IPQ3SY00 556 aa14.03□□□□□ -0.16
CD44-209ENST00000433892 RABL6Q3YEC7 729 aaPredicted RBP14.03□□□□□ -0.16
CD44-209ENST00000433892 ALDH8A1Q9H2A2 487 aaPredicted RBP14.03□□□□□ -0.16
CD44-209ENST00000433892 USPL1Q5W0Q7 1092 aa14.03□□□□□ -0.16
CD44-209ENST00000433892 DDX46Q7L014 1031 aaKnown RBP14.03□□□□□ -0.16
CD44-209ENST00000433892 ATF3P18847 181 aa14.02□□□□□ -0.16
CD44-209ENST00000433892 CABP4P57796 275 aa14.02□□□□□ -0.16
CD44-209ENST00000433892 NEK1Q96PY6 1258 aa14.02□□□□□ -0.16
CD44-209ENST00000433892 TTC12Q9H892 705 aaPredicted RBP14.02□□□□□ -0.16
CD44-209ENST00000433892 TFIP11Q9UBB9 837 aaKnown RBP14.02□□□□□ -0.16
CD44-209ENST00000433892 KIF1AQ12756 1690 aa14.02□□□□□ -0.17
CD44-209ENST00000433892 ALS2Q96Q42 1657 aa14.02□□□□□ -0.17
CD44-209ENST00000433892 JAK2O60674 1132 aa14.02□□□□□ -0.17
CD44-209ENST00000433892 LIG1P18858 919 aa14.02□□□□□ -0.17
CD44-209ENST00000433892 CAMK4Q16566 473 aa14.02□□□□□ -0.17
CD44-209ENST00000433892 LMBR1LQ6UX01 489 aa14.02□□□□□ -0.17
CD44-209ENST00000433892 ZNF609O15014 1411 aa14.02□□□□□ -0.17
CD44-209ENST00000433892 MST1RQ04912 1400 aa14.02□□□□□ -0.17
CD44-209ENST00000433892 PDIA4P13667 645 aaKnown RBP14.01□□□□□ -0.17
CD44-209ENST00000433892 KRT32Q14532 448 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 HAUS7Q99871 368 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 UQCRHLA0A096LP55 91 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 AP5Z1O43299 807 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 UQCRHP07919 91 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 CYP21A2P08686 494 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 CASP7P55210 303 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 RBM10P98175 930 aaKnown RBP14.01□□□□□ -0.17
CD44-209ENST00000433892 MCMDC2Q4G0Z9 681 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 PLBD2Q8NHP8 589 aa14.01□□□□□ -0.17
CD44-209ENST00000433892 ELP1O95163 1332 aa14□□□□□ -0.17
CD44-209ENST00000433892 CCDC192P0DO97 292 aa14□□□□□ -0.17
CD44-209ENST00000433892 Q6ZUG5 572 aa14□□□□□ -0.17
CD44-209ENST00000433892 GTF3C6Q969F1 213 aa14□□□□□ -0.17
CD44-209ENST00000433892 SPATA32Q96LK8 384 aa14□□□□□ -0.17
CD44-209ENST00000433892 LRRC2Q9BYS8 371 aa14□□□□□ -0.17
CD44-209ENST00000433892 SLFNL1Q499Z3 407 aa13.99□□□□□ -0.17
CD44-209ENST00000433892 NEUROD6Q96NK8 337 aa13.99□□□□□ -0.17
CD44-209ENST00000433892 NUP62CLQ9H1M0 184 aa13.99□□□□□ -0.17
CD44-209ENST00000433892 U3KPZ7 1027 aaPredicted RBP13.99□□□□□ -0.17
CD44-209ENST00000433892 AFDNP55196 1824 aaKnown RBP13.99□□□□□ -0.17
CD44-209ENST00000433892 GOLGA6L4A6NEF3 574 aa13.99□□□□□ -0.17
CD44-209ENST00000433892 HSP90B1P14625 803 aaKnown RBP13.99□□□□□ -0.17
CD44-209ENST00000433892 MAP3K11Q16584 847 aa13.99□□□□□ -0.17
CD44-209ENST00000433892 C17orf53Q8N3J3 647 aaPredicted RBP13.99□□□□□ -0.17
CD44-209ENST00000433892 LEO1Q8WVC0 666 aaPredicted RBP13.99□□□□□ -0.17
CD44-209ENST00000433892 SCAND2PQ9GZW5 306 aaPredicted RBP13.99□□□□□ -0.17
CD44-209ENST00000433892 DACT1Q9NYF0 836 aa13.99□□□□□ -0.17
CD44-209ENST00000433892 ADAMTSL3P82987 1691 aa13.99□□□□□ -0.17
CD44-209ENST00000433892 NBPF26B4DH59 902 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 FOXO4P98177 505 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 NBPF14Q5TI25 921 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 NBPF10Q6P3W6 841 aaKnown RBP13.98□□□□□ -0.17
CD44-209ENST00000433892 CKAP2LQ8IYA6 745 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 NBPF15Q8N660 670 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 PIBF1Q8WXW3 757 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 DDX11Q96FC9 970 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 GOLIM4O00461 696 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 TIMM10P62072 90 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 DNTTIP2Q5QJE6 756 aaKnown RBP13.98□□□□□ -0.17
CD44-209ENST00000433892 SASS6Q6UVJ0 657 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 TTLL7Q6ZT98 887 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 KLHL34Q8N239 644 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 KBTBD3Q8NAB2 608 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 BRF1Q92994 677 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 FAM13BQ9NYF5 915 aa13.98□□□□□ -0.17
CD44-209ENST00000433892 ARFGEF2Q9Y6D5 1785 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 FGD1P98174 961 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 NOLC1Q14978 699 aaKnown RBP eCLIP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms