RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 KIF20BQ96Q89 1820 aa5.92□□□□□ -1.46
SF3B1-202ENST00000409915 CPDO75976 1380 aa5.92□□□□□ -1.46
SF3B1-202ENST00000409915 CAMTA1Q9Y6Y1 1673 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 NWD2Q9ULI1 1742 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 A0A0G2JS52 829 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 MOXD2PA6NHM9 499 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 FYB1O15117 783 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 ITGBL1O95965 494 aaPredicted RBP5.91□□□□□ -1.46
SF3B1-202ENST00000409915 KCNC4Q03721 635 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 CNGB1Q14028 1251 aaPredicted RBP5.91□□□□□ -1.46
SF3B1-202ENST00000409915 CCDC181Q5TID7 509 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 EGFLAMQ63HQ2 1017 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 NYAP1Q6ZVC0 841 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 PXYLP1Q8TE99 480 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 DHX38Q92620 1227 aaKnown RBP5.91□□□□□ -1.46
SF3B1-202ENST00000409915 VTI1AQ96AJ9 217 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 COG3Q96JB2 828 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 BACH2Q9BYV9 841 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 TRPC5Q9UL62 973 aaPredicted RBP5.91□□□□□ -1.46
SF3B1-202ENST00000409915 PCDHB15Q9Y5E8 787 aa5.91□□□□□ -1.46
SF3B1-202ENST00000409915 COL5A2P05997 1499 aaPredicted RBP5.9□□□□□ -1.46
SF3B1-202ENST00000409915 SCAMP3O14828 347 aaKnown RBP5.9□□□□□ -1.46
SF3B1-202ENST00000409915 RXRBP28702 533 aa5.9□□□□□ -1.46
SF3B1-202ENST00000409915 TNNT2P45379 298 aaPredicted RBP5.9□□□□□ -1.46
SF3B1-202ENST00000409915 RBM6P78332 1123 aaKnown RBP5.9□□□□□ -1.46
SF3B1-202ENST00000409915 RRS1Q15050 365 aaKnown RBP5.9□□□□□ -1.46
SF3B1-202ENST00000409915 VPS72Q15906 364 aa5.9□□□□□ -1.46
SF3B1-202ENST00000409915 PTPROQ16827 1216 aa5.9□□□□□ -1.46
SF3B1-202ENST00000409915 CCDC144BQ3MJ40 725 aa5.9□□□□□ -1.46
SF3B1-202ENST00000409915 LARP1Q6PKG0 1096 aaKnown RBP5.9□□□□□ -1.46
SF3B1-202ENST00000409915 ARHGEF25Q86VW2 580 aa5.9□□□□□ -1.46
SF3B1-202ENST00000409915 KCNH5Q8NCM2 988 aa5.9□□□□□ -1.46
SF3B1-202ENST00000409915 CCDC136Q96JN2 1154 aa5.9□□□□□ -1.46
SF3B1-202ENST00000409915 IRX2Q9BZI1 471 aaPredicted RBP5.9□□□□□ -1.46
SF3B1-202ENST00000409915 PRKAG2Q9UGJ0 569 aa5.9□□□□□ -1.46
SF3B1-202ENST00000409915 CGNL1Q0VF96 1302 aa5.9□□□□□ -1.47
SF3B1-202ENST00000409915 AATKQ6ZMQ8 1374 aa5.9□□□□□ -1.47
SF3B1-202ENST00000409915 COL18A1P39060 1754 aa5.9□□□□□ -1.47
SF3B1-202ENST00000409915 LTN1O94822 1766 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 RCCD1A6NED2 376 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 NDUFV2P19404 249 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 RAD51AP2Q09MP3 1159 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 IFFO2Q5TF58 517 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 NUTM1Q86Y26 1132 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 ZNF516Q92618 1163 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 SPACA7Q96KW9 195 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 IQSEC3Q9UPP2 1182 aaPredicted RBP5.89□□□□□ -1.47
SF3B1-202ENST00000409915 MAP3K19Q56UN5 1328 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 EP400Q96L91 3159 aa5.89□□□□□ -1.47
SF3B1-202ENST00000409915 PEAK1Q9H792 1746 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 RGPD5Q99666 1765 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 ATP2B1P20020 1258 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 ATP2B4P23634 1241 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 MAPK1P28482 360 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 GTF2F1P35269 517 aaKnown RBP eCLIP5.88□□□□□ -1.47
SF3B1-202ENST00000409915 EVA1CP58658 441 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 AAMPQ13685 434 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 TJAP1Q5JTD0 557 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 MORC4Q8TE76 937 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 KCNB2Q92953 911 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 CLP1Q92989 425 aaKnown RBP5.88□□□□□ -1.47
SF3B1-202ENST00000409915 LTV1Q96GA3 475 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-202ENST00000409915 MTRQ99707 1265 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 TINF2Q9BSI4 451 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 TMEM134Q9H6X4 195 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 EMILIN1Q9Y6C2 1016 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 SPATA31A1Q5TZJ5 1347 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 SPATA31A5Q5VU36 1347 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 SPATA31A7Q8IWB4 1347 aa5.88□□□□□ -1.47
SF3B1-202ENST00000409915 CDK12Q9NYV4 1490 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L15C9J2P7 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L10C9JJH3 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L13C9JLJ4 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L12C9JPN9 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L11C9JVI0 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L21D6R901 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L18D6R9N7 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L22D6RA61 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L17D6RBQ6 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L19D6RCP7 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L20D6RJB6 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 RGS20O76081 388 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 SLC10A3P09131 477 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 IBSPP21815 317 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-202ENST00000409915 HOXC9P31274 260 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 GJA5P36382 358 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 SCNN1AP37088 669 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 AMPHP49418 695 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 USP17L24Q0WX57 530 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 CC2D1BQ5T0F9 858 aaKnown RBP5.87□□□□□ -1.47
SF3B1-202ENST00000409915 TOM1L2Q6ZVM7 507 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 SEPT12Q8IYM1 358 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 ANKRD24Q8TF21 1146 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 PIF1Q9H611 641 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 KNSTRNQ9Y448 316 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 CRB1P82279 1406 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 ABCC6O95255 1503 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 THSD7AQ9UPZ6 1657 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 ANKRD26Q9UPS8 1709 aa5.87□□□□□ -1.47
SF3B1-202ENST00000409915 RTL1A6NKG5 1358 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms