RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SCAND2PQ9GZW5 306 aaPredicted RBP15.08■□□□□ 0
SHMT1-205ENST00000395684 AXIN2Q9Y2T1 843 aa15.08■□□□□ 0
SHMT1-205ENST00000395684 CHD2O14647 1828 aaKnown RBP15.07■□□□□ 0
SHMT1-205ENST00000395684 COL15A1P39059 1388 aa15.07■□□□□ 0
SHMT1-205ENST00000395684 LEO1Q8WVC0 666 aaPredicted RBP15.07■□□□□ 0
SHMT1-205ENST00000395684 TNMDQ9H2S6 317 aa15.07■□□□□ 0
SHMT1-205ENST00000395684 JCADQ9P266 1359 aa15.07■□□□□ 0
SHMT1-205ENST00000395684 OVOS2A0A0G2JMS6 1433 aa15.07■□□□□ 0
SHMT1-205ENST00000395684 NEURL1BA8MQ27 555 aa15.07■□□□□ 0
SHMT1-205ENST00000395684 CHGBP05060 677 aa15.07■□□□□ 0
SHMT1-205ENST00000395684 SLC39A6Q13433 755 aa15.07■□□□□ 0
SHMT1-205ENST00000395684 JAK2O60674 1132 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 TPM3P06753 285 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 MYL6BP14649 208 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 ANO6Q4KMQ2 910 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 USPL1Q5W0Q7 1092 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 HMG20BQ9P0W2 317 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 NDUFB9Q9Y6M9 179 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 NPHP3Q7Z494 1330 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 PTGS1P23219 599 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 GCKRQ14397 625 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 PGBD1Q96JS3 809 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 CBX8Q9HC52 389 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 KIF3AQ9Y496 699 aa15.06■□□□□ 0
SHMT1-205ENST00000395684 GOLGA6L4A6NEF3 574 aa15.05■□□□□ 0
SHMT1-205ENST00000395684 NR1I2O75469 434 aa15.05■□□□□ 0
SHMT1-205ENST00000395684 RBM43Q6ZSC3 357 aaKnown RBP15.05■□□□□ 0
SHMT1-205ENST00000395684 DBNLQ9UJU6 430 aaKnown RBP15.05■□□□□ 0
SHMT1-205ENST00000395684 GOLGA6L6A8MZA4 724 aa15.05■□□□□ -0
SHMT1-205ENST00000395684 PHRF1Q9P1Y6 1649 aaKnown RBP15.05■□□□□ -0
SHMT1-205ENST00000395684 ZNF790Q6PG37 636 aa15.04■□□□□ -0
SHMT1-205ENST00000395684 XAGE3Q8WTP9 111 aa15.04■□□□□ -0
SHMT1-205ENST00000395684 GTF3C6Q969F1 213 aa15.04■□□□□ -0
SHMT1-205ENST00000395684 ORAI2Q96SN7 254 aa15.04■□□□□ -0
SHMT1-205ENST00000395684 CCDC94Q9BW85 323 aaPredicted RBP15.04■□□□□ -0
SHMT1-205ENST00000395684 COPS6Q7L5N1 327 aa15.04■□□□□ -0
SHMT1-205ENST00000395684 DDX11Q96FC9 970 aa15.04■□□□□ -0
SHMT1-205ENST00000395684 MYD88Q99836 296 aa15.04■□□□□ -0
SHMT1-205ENST00000395684 CLSTN2Q9H4D0 955 aa15.04■□□□□ -0
SHMT1-205ENST00000395684 DDX19AQ9NUU7 478 aaKnown RBP15.04■□□□□ -0
SHMT1-205ENST00000395684 ATP5JP18859 108 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 NEXNQ0ZGT2 675 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 CCDC129Q6ZRS4 1044 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 NEK1Q96PY6 1258 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 SEC62Q99442 399 aaKnown RBP15.03■□□□□ -0
SHMT1-205ENST00000395684 RFX5P48382 616 aaPredicted RBP15.03■□□□□ -0
SHMT1-205ENST00000395684 TFCP2Q12800 502 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 LMOD2Q6P5Q4 547 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 CCDC186Q7Z3E2 898 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 BRF1Q92994 677 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 METTL22Q9BUU2 404 aaPredicted RBP15.03■□□□□ -0
SHMT1-205ENST00000395684 BCL2L12Q9HB09 334 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 COPRSQ9NQ92 184 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 NRBP1Q9UHY1 535 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 MRC1P22897 1456 aa15.03■□□□□ -0
SHMT1-205ENST00000395684 RIOK3O14730 519 aaKnown RBP15.02■□□□□ -0
SHMT1-205ENST00000395684 PTPN12Q05209 780 aaKnown RBP15.02■□□□□ -0
SHMT1-205ENST00000395684 RESTQ13127 1097 aa15.02■□□□□ -0
SHMT1-205ENST00000395684 TNNI3KQ59H18 835 aa15.02■□□□□ -0
SHMT1-205ENST00000395684 Q6ZUG5 572 aa15.02■□□□□ -0
SHMT1-205ENST00000395684 FPGT-TNNI3KV9GXZ4 949 aa15.02■□□□□ -0
SHMT1-205ENST00000395684 CYP21A2P08686 494 aa15.02□□□□□ -0.01
SHMT1-205ENST00000395684 LRMPQ12912 555 aa15.02□□□□□ -0.01
SHMT1-205ENST00000395684 KRT32Q14532 448 aa15.02□□□□□ -0.01
SHMT1-205ENST00000395684 PLA2G4DQ86XP0 818 aa15.01□□□□□ -0.01
SHMT1-205ENST00000395684 BICD2Q8TD16 824 aa15.01□□□□□ -0.01
SHMT1-205ENST00000395684 FER1L4A9Z1Z3 1794 aa15.01□□□□□ -0.01
SHMT1-205ENST00000395684 SIPA1L3O60292 1781 aaPredicted RBP15.01□□□□□ -0.01
SHMT1-205ENST00000395684 PIP4K2AP48426 406 aaPredicted RBP15.01□□□□□ -0.01
SHMT1-205ENST00000395684 NFATC2IPQ8NCF5 419 aa15.01□□□□□ -0.01
SHMT1-205ENST00000395684 LRRC2Q9BYS8 371 aa15.01□□□□□ -0.01
SHMT1-205ENST00000395684 DNAJC25Q9H1X3 360 aa15.01□□□□□ -0.01
SHMT1-205ENST00000395684 ZNF609O15014 1411 aa15.01□□□□□ -0.01
SHMT1-205ENST00000395684 ZNF165P49910 485 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 ZNF75DP51815 510 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 TDRD7Q8NHU6 1098 aaKnown RBP15□□□□□ -0.01
SHMT1-205ENST00000395684 TRIM5Q9C035 493 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 SCRN1Q12765 414 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 ANKRD13DQ6ZTN6 518 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 LRP10Q7Z4F1 713 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 DNAJC2Q99543 621 aaKnown RBP15□□□□□ -0.01
SHMT1-205ENST00000395684 DBNDD2Q9BQY9 259 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 SLC52A2Q9HAB3 445 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 DRC7Q8IY82 874 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 ZNF496Q96IT1 587 aaPredicted RBP15□□□□□ -0.01
SHMT1-205ENST00000395684 PRDM4Q9UKN5 801 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 USP16Q9Y5T5 823 aa15□□□□□ -0.01
SHMT1-205ENST00000395684 HSP90B1P14625 803 aaKnown RBP14.99□□□□□ -0.01
SHMT1-205ENST00000395684 CHAF1AQ13111 956 aaPredicted RBP14.99□□□□□ -0.01
SHMT1-205ENST00000395684 STOX1Q6ZVD7 989 aa14.99□□□□□ -0.01
SHMT1-205ENST00000395684 U3KPZ7 1027 aaPredicted RBP14.99□□□□□ -0.01
SHMT1-205ENST00000395684 SLIT3O75094 1523 aa14.99□□□□□ -0.01
SHMT1-205ENST00000395684 H3BQV1 296 aa14.99□□□□□ -0.01
SHMT1-205ENST00000395684 ADD1P35611 737 aaKnown RBP14.99□□□□□ -0.01
SHMT1-205ENST00000395684 CEBPZQ03701 1054 aaKnown RBP14.99□□□□□ -0.01
SHMT1-205ENST00000395684 MCMDC2Q4G0Z9 681 aa14.99□□□□□ -0.01
SHMT1-205ENST00000395684 IFFO2Q5TF58 517 aa14.99□□□□□ -0.01
SHMT1-205ENST00000395684 DDX46Q7L014 1031 aaKnown RBP14.99□□□□□ -0.01
SHMT1-205ENST00000395684 UBE3BQ7Z3V4 1068 aa14.99□□□□□ -0.01
SHMT1-205ENST00000395684 ANKLE2Q86XL3 938 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms