RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 MED23Q9ULK4 1368 aa24.52■■□□□ 1.52
CLK3-202ENST00000395066 ERBB3P21860 1342 aa24.52■■□□□ 1.52
CLK3-202ENST00000395066 HIP1O00291 1037 aa24.52■■□□□ 1.52
CLK3-202ENST00000395066 PSMA5P28066 241 aa24.52■■□□□ 1.52
CLK3-202ENST00000395066 SPC24Q8NBT2 197 aa24.52■■□□□ 1.52
CLK3-202ENST00000395066 SIPA1L3O60292 1781 aaPredicted RBP24.52■■□□□ 1.52
CLK3-202ENST00000395066 DNAJC2Q99543 621 aaKnown RBP24.51■■□□□ 1.51
CLK3-202ENST00000395066 KDM6AO15550 1401 aaPredicted RBP24.51■■□□□ 1.51
CLK3-202ENST00000395066 JAK2O60674 1132 aa24.51■■□□□ 1.51
CLK3-202ENST00000395066 SLFNL1Q499Z3 407 aa24.51■■□□□ 1.51
CLK3-202ENST00000395066 UBE3BQ7Z3V4 1068 aa24.51■■□□□ 1.51
CLK3-202ENST00000395066 SLC52A2Q9HAB3 445 aa24.51■■□□□ 1.51
CLK3-202ENST00000395066 TAF5LO75529 589 aa24.5■■□□□ 1.51
CLK3-202ENST00000395066 CKAP2LQ8IYA6 745 aa24.5■■□□□ 1.51
CLK3-202ENST00000395066 RAPGEF4Q8WZA2 1011 aa24.5■■□□□ 1.51
CLK3-202ENST00000395066 TSC1Q92574 1164 aa24.5■■□□□ 1.51
CLK3-202ENST00000395066 LRRC2Q9BYS8 371 aa24.5■■□□□ 1.51
CLK3-202ENST00000395066 KRT85P78386 507 aa24.5■■□□□ 1.51
CLK3-202ENST00000395066 HMGN5P82970 282 aaKnown RBP24.5■■□□□ 1.51
CLK3-202ENST00000395066 SLIT3O75094 1523 aa24.5■■□□□ 1.51
CLK3-202ENST00000395066 RNF20Q5VTR2 975 aa24.49■■□□□ 1.51
CLK3-202ENST00000395066 METTL22Q9BUU2 404 aaPredicted RBP24.49■■□□□ 1.51
CLK3-202ENST00000395066 OVOS2A0A0G2JMS6 1433 aa24.49■■□□□ 1.51
CLK3-202ENST00000395066 NPHP3Q7Z494 1330 aa24.49■■□□□ 1.51
CLK3-202ENST00000395066 DDX11Q96FC9 970 aa24.49■■□□□ 1.51
CLK3-202ENST00000395066 SNRKQ9NRH2 765 aa24.48■■□□□ 1.51
CLK3-202ENST00000395066 PTPN12Q05209 780 aaKnown RBP24.48■■□□□ 1.51
CLK3-202ENST00000395066 ANKRD13DQ6ZTN6 518 aa24.48■■□□□ 1.51
CLK3-202ENST00000395066 DBNDD2Q9BQY9 259 aa24.48■■□□□ 1.51
CLK3-202ENST00000395066 TNNI3KQ59H18 835 aa24.48■■□□□ 1.51
CLK3-202ENST00000395066 DDX46Q7L014 1031 aaKnown RBP24.48■■□□□ 1.51
CLK3-202ENST00000395066 FPGT-TNNI3KV9GXZ4 949 aa24.48■■□□□ 1.51
CLK3-202ENST00000395066 FOSBP53539 338 aa24.47■■□□□ 1.51
CLK3-202ENST00000395066 CABLES1Q8TDN4 633 aa24.47■■□□□ 1.51
CLK3-202ENST00000395066 PRDM4Q9UKN5 801 aa24.47■■□□□ 1.51
CLK3-202ENST00000395066 PHKG2P15735 406 aa24.47■■□□□ 1.51
CLK3-202ENST00000395066 SMAP1Q8IYB5 467 aaPredicted RBP24.47■■□□□ 1.51
CLK3-202ENST00000395066 SPTLC3Q9NUV7 552 aa24.47■■□□□ 1.51
CLK3-202ENST00000395066 GTF2F1P35269 517 aaKnown RBP eCLIP24.46■■□□□ 1.51
CLK3-202ENST00000395066 RFX5P48382 616 aaPredicted RBP24.46■■□□□ 1.51
CLK3-202ENST00000395066 CCDC94Q9BW85 323 aaPredicted RBP24.46■■□□□ 1.51
CLK3-202ENST00000395066 DACT1Q9NYF0 836 aa24.46■■□□□ 1.51
CLK3-202ENST00000395066 PPFIA3O75145 1194 aa24.46■■□□□ 1.51
CLK3-202ENST00000395066 LUZP1Q86V48 1076 aa24.46■■□□□ 1.51
CLK3-202ENST00000395066 FAM177BA6PVY3 158 aa24.45■■□□□ 1.5
CLK3-202ENST00000395066 NUP62CLQ9H1M0 184 aa24.45■■□□□ 1.5
CLK3-202ENST00000395066 CCDC192P0DO97 292 aa24.45■■□□□ 1.5
CLK3-202ENST00000395066 TRHP20396 242 aaPredicted RBP24.45■■□□□ 1.5
CLK3-202ENST00000395066 LRP10Q7Z4F1 713 aa24.45■■□□□ 1.5
CLK3-202ENST00000395066 KCNF1Q9H3M0 494 aa24.45■■□□□ 1.5
CLK3-202ENST00000395066 ZNF609O15014 1411 aa24.45■■□□□ 1.5
CLK3-202ENST00000395066 CHRNA2Q15822 529 aa24.44■■□□□ 1.5
CLK3-202ENST00000395066 SPATA32Q96LK8 384 aa24.44■■□□□ 1.5
CLK3-202ENST00000395066 KLHL34Q8N239 644 aa24.44■■□□□ 1.5
CLK3-202ENST00000395066 PYCARDQ9ULZ3 195 aa24.44■■□□□ 1.5
CLK3-202ENST00000395066 MRVI1Q9Y6F6 885 aa24.44■■□□□ 1.5
CLK3-202ENST00000395066 MEGF6O75095 1541 aa24.43■■□□□ 1.5
CLK3-202ENST00000395066 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.43■■□□□ 1.5
CLK3-202ENST00000395066 CSB-PGBD3P0DP91 1061 aa24.43■■□□□ 1.5
CLK3-202ENST00000395066 HSP90B1P14625 803 aaKnown RBP24.43■■□□□ 1.5
CLK3-202ENST00000395066 ANKRD1Q15327 319 aa24.43■■□□□ 1.5
CLK3-202ENST00000395066 Q6ZUG5 572 aa24.43■■□□□ 1.5
CLK3-202ENST00000395066 COPRSQ9NQ92 184 aa24.43■■□□□ 1.5
CLK3-202ENST00000395066 A0A087WZG4 1122 aa24.43■■□□□ 1.5
CLK3-202ENST00000395066 MAP3K11Q16584 847 aa24.43■■□□□ 1.5
CLK3-202ENST00000395066 CYP21A2P08686 494 aa24.42■■□□□ 1.5
CLK3-202ENST00000395066 ATP5JP18859 108 aa24.42■■□□□ 1.5
CLK3-202ENST00000395066 PDCP20941 246 aa24.42■■□□□ 1.5
CLK3-202ENST00000395066 TYRO3Q06418 890 aa24.42■■□□□ 1.5
CLK3-202ENST00000395066 ZNF710Q8N1W2 664 aa24.42■■□□□ 1.5
CLK3-202ENST00000395066 LEO1Q8WVC0 666 aaPredicted RBP24.42■■□□□ 1.5
CLK3-202ENST00000395066 GOLGA6L4A6NEF3 574 aa24.42■■□□□ 1.5
CLK3-202ENST00000395066 TATP17735 454 aaPredicted RBP24.42■■□□□ 1.5
CLK3-202ENST00000395066 CEBPZQ03701 1054 aaKnown RBP24.42■■□□□ 1.5
CLK3-202ENST00000395066 TTC5Q8N0Z6 440 aa24.42■■□□□ 1.5
CLK3-202ENST00000395066 NEK1Q96PY6 1258 aa24.42■■□□□ 1.5
CLK3-202ENST00000395066 A0A0G2JLW4 131 aa24.41■■□□□ 1.5
CLK3-202ENST00000395066 BRF1Q92994 677 aa24.41■■□□□ 1.5
CLK3-202ENST00000395066 JCADQ9P266 1359 aa24.41■■□□□ 1.5
CLK3-202ENST00000395066 CAMTA1Q9Y6Y1 1673 aa24.41■■□□□ 1.5
CLK3-202ENST00000395066 PROSER2Q86WR7 435 aaPredicted RBP24.41■■□□□ 1.5
CLK3-202ENST00000395066 TNMDQ9H2S6 317 aa24.41■■□□□ 1.5
CLK3-202ENST00000395066 CYP27B1O15528 508 aa24.4■■□□□ 1.5
CLK3-202ENST00000395066 NR1I2O75469 434 aa24.4■■□□□ 1.5
CLK3-202ENST00000395066 GTF3C6Q969F1 213 aa24.4■■□□□ 1.5
CLK3-202ENST00000395066 PGBD1Q96JS3 809 aa24.4■■□□□ 1.5
CLK3-202ENST00000395066 HMG20BQ9P0W2 317 aa24.4■■□□□ 1.5
CLK3-202ENST00000395066 USPL1Q5W0Q7 1092 aa24.4■■□□□ 1.5
CLK3-202ENST00000395066 STOX1Q6ZVD7 989 aa24.4■■□□□ 1.5
CLK3-202ENST00000395066 TRPM3Q9HCF6 1732 aaPredicted RBP24.39■■□□□ 1.5
CLK3-202ENST00000395066 MRC1P22897 1456 aa24.39■■□□□ 1.5
CLK3-202ENST00000395066 SNRPA1P09661 255 aaKnown RBP24.39■■□□□ 1.5
CLK3-202ENST00000395066 ANO6Q4KMQ2 910 aa24.39■■□□□ 1.5
CLK3-202ENST00000395066 LMBR1LQ6UX01 489 aa24.39■■□□□ 1.5
CLK3-202ENST00000395066 KIF3AQ9Y496 699 aa24.39■■□□□ 1.5
CLK3-202ENST00000395066 ADAMTS7Q9UKP4 1686 aa24.39■■□□□ 1.5
CLK3-202ENST00000395066 ELP1O95163 1332 aa24.39■■□□□ 1.49
CLK3-202ENST00000395066 FAM200AQ8TCP9 573 aa24.38■■□□□ 1.49
CLK3-202ENST00000395066 NEUROD6Q96NK8 337 aa24.38■■□□□ 1.49
CLK3-202ENST00000395066 FTOQ9C0B1 505 aaKnown RBP eCLIP24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms