RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TNNQ9UQP3 1299 aa8.87□□□□□ -0.99
LIMA1-202ENST00000394943 ECM29Q5VYK3 1845 aa8.87□□□□□ -0.99
LIMA1-202ENST00000394943 C3orf67Q6ZVT6 689 aa8.86□□□□□ -0.99
LIMA1-202ENST00000394943 SUCLG2Q96I99 432 aa8.86□□□□□ -0.99
LIMA1-202ENST00000394943 PSDA5PKW4 1024 aaPredicted RBP8.86□□□□□ -0.99
LIMA1-202ENST00000394943 CC2D2BQ6DHV5 1058 aa8.86□□□□□ -0.99
LIMA1-202ENST00000394943 COPRSQ9NQ92 184 aa8.86□□□□□ -0.99
LIMA1-202ENST00000394943 AIMP1Q12904 312 aaKnown RBP8.86□□□□□ -0.99
LIMA1-202ENST00000394943 NBPF5PQ86XG9 351 aaPredicted RBP8.86□□□□□ -0.99
LIMA1-202ENST00000394943 VGLL2Q8N8G2 317 aa8.86□□□□□ -0.99
LIMA1-202ENST00000394943 IRS4O14654 1257 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-202ENST00000394943 NBPF7P0C2Y1 421 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-202ENST00000394943 GRAPQ13588 217 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 EPHA10Q5JZY3 1008 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 GRAPLQ8TC17 118 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-202ENST00000394943 COL4A5P29400 1685 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 IGSF3O75054 1194 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 BBOX1O75936 387 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 ZBTB7AO95365 584 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 ATP8B2P98198 1209 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 ZC3H4Q9UPT8 1303 aaKnown RBP8.85□□□□□ -0.99
LIMA1-202ENST00000394943 MYH13Q9UKX3 1938 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 CCDC88AQ3V6T2 1871 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 AKAP11Q9UKA4 1901 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 HDAC1Q13547 482 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-202ENST00000394943 SP8Q8IXZ3 490 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 PSMD1Q99460 953 aa8.85□□□□□ -0.99
LIMA1-202ENST00000394943 BSDC1Q9NW68 430 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-202ENST00000394943 SENP3-EIF4A1A0A087X0R7 540 aa8.84□□□□□ -0.99
LIMA1-202ENST00000394943 RPAP2Q8IXW5 612 aaPredicted RBP8.84□□□□□ -0.99
LIMA1-202ENST00000394943 GPR108Q9NPR9 543 aa8.84□□□□□ -0.99
LIMA1-202ENST00000394943 ALDH1B1P30837 517 aa8.84□□□□□ -0.99
LIMA1-202ENST00000394943 SOGA3Q5TF21 947 aa8.84□□□□□ -0.99
LIMA1-202ENST00000394943 RBM17Q96I25 401 aaKnown RBP8.84□□□□□ -0.99
LIMA1-202ENST00000394943 SYT17Q9BSW7 474 aa8.84□□□□□ -0.99
LIMA1-202ENST00000394943 TRMT112Q9UI30 125 aaKnown RBP8.84□□□□□ -0.99
LIMA1-202ENST00000394943 PDS5AQ29RF7 1337 aaKnown RBP8.84□□□□□ -0.99
LIMA1-202ENST00000394943 C20orf194Q5TEA3 1177 aa8.84□□□□□ -0.99
LIMA1-202ENST00000394943 CNKSR1Q969H4 720 aa8.84□□□□□ -0.99
LIMA1-202ENST00000394943 MEIS3Q99687 375 aa8.84□□□□□ -0.99
LIMA1-202ENST00000394943 ATP5J2-PTCD1G3V325 749 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 CCDC152Q4G0S7 254 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 CEP85Q6P2H3 762 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 BCL2L13Q9BXK5 485 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 ATP6V0A2Q9Y487 856 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 RIPOR2Q9Y4F9 1068 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 FOCADQ5VW36 1801 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 SCN4AP35499 1836 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 SIRT2Q8IXJ6 389 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 NLRP3Q96P20 1036 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 TCERG1O14776 1098 aaKnown RBP8.83□□□□□ -1
LIMA1-202ENST00000394943 GNAI2P04899 355 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 FGFR2P21802 821 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 PTPN12Q05209 780 aaKnown RBP8.83□□□□□ -1
LIMA1-202ENST00000394943 FAM89AQ96GI7 184 aa8.83□□□□□ -1
LIMA1-202ENST00000394943 NPM2Q86SE8 214 aaKnown RBP8.82□□□□□ -1
LIMA1-202ENST00000394943 BICC1Q9H694 974 aaKnown RBP8.82□□□□□ -1
LIMA1-202ENST00000394943 MED23Q9ULK4 1368 aa8.82□□□□□ -1
LIMA1-202ENST00000394943 DPEP1P16444 411 aa8.82□□□□□ -1
LIMA1-202ENST00000394943 MSL1Q68DK7 614 aa8.82□□□□□ -1
LIMA1-202ENST00000394943 ATG9AQ7Z3C6 839 aa8.82□□□□□ -1
LIMA1-202ENST00000394943 SYNE4Q8N205 404 aa8.82□□□□□ -1
LIMA1-202ENST00000394943 FHDC1Q9C0D6 1143 aaPredicted RBP8.82□□□□□ -1
LIMA1-202ENST00000394943 ATF5Q9Y2D1 282 aaPredicted RBP8.82□□□□□ -1
LIMA1-202ENST00000394943 GPTP24298 496 aa8.82□□□□□ -1
LIMA1-202ENST00000394943 ZNF512BQ96KM6 892 aaPredicted RBP8.82□□□□□ -1
LIMA1-202ENST00000394943 PAPPA2Q9BXP8 1791 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 UBE3BQ7Z3V4 1068 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 H0YIN7 160 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 UBTFL1P0CB47 393 aaPredicted RBP8.81□□□□□ -1
LIMA1-202ENST00000394943 C2CD5Q86YS7 1000 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 PANK1Q8TE04 598 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 PIM2Q9P1W9 311 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 DDX60LQ5H9U9 1706 aaKnown RBP8.81□□□□□ -1
LIMA1-202ENST00000394943 MROH5Q6ZUA9 1318 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 SALL3Q9BXA9 1300 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 TICAM2Q86XR7 235 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 NUTM1Q86Y26 1132 aa8.81□□□□□ -1
LIMA1-202ENST00000394943 KDM2BQ8NHM5 1336 aa8.8□□□□□ -1
LIMA1-202ENST00000394943 FKBP1AP62942 108 aaKnown RBP8.8□□□□□ -1
LIMA1-202ENST00000394943 NLGN2Q8NFZ4 835 aa8.8□□□□□ -1
LIMA1-202ENST00000394943 GREM2Q9H772 168 aa8.8□□□□□ -1
LIMA1-202ENST00000394943 ZNF804BA4D1E1 1349 aa8.8□□□□□ -1
LIMA1-202ENST00000394943 MMP14P50281 582 aa8.8□□□□□ -1
LIMA1-202ENST00000394943 TTLL6Q8N841 843 aa8.8□□□□□ -1
LIMA1-202ENST00000394943 SCN9AQ15858 1988 aa8.8□□□□□ -1
LIMA1-202ENST00000394943 CDC5LQ99459 802 aaKnown RBP8.79□□□□□ -1
LIMA1-202ENST00000394943 CLUAP1Q96AJ1 413 aa8.79□□□□□ -1
LIMA1-202ENST00000394943 DCTPP1Q9H773 170 aa8.79□□□□□ -1
LIMA1-202ENST00000394943 LRRFIP2Q9Y608 721 aaKnown RBP8.79□□□□□ -1
LIMA1-202ENST00000394943 MYH7P12883 1935 aa8.79□□□□□ -1
LIMA1-202ENST00000394943 PPEF1O14829 653 aaPredicted RBP8.79□□□□□ -1
LIMA1-202ENST00000394943 ITGA6P23229 1130 aa8.79□□□□□ -1
LIMA1-202ENST00000394943 PRPF40BQ6NWY9 871 aaKnown RBP8.79□□□□□ -1
LIMA1-202ENST00000394943 RTKN2Q8IZC4 609 aa8.79□□□□□ -1
LIMA1-202ENST00000394943 C9orf78Q9NZ63 289 aaPredicted RBP8.79□□□□□ -1
LIMA1-202ENST00000394943 LEMD3Q9Y2U8 911 aa8.79□□□□□ -1
LIMA1-202ENST00000394943 HCLS1P14317 486 aaPredicted RBP8.78□□□□□ -1
LIMA1-202ENST00000394943 RPS8P62241 208 aaKnown RBP8.78□□□□□ -1
LIMA1-202ENST00000394943 FKBP4Q02790 459 aaKnown RBP eCLIP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms