RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 LINC00116Q8NCU8 138 aa13.35□□□□□ -0.27
CUX1-204ENST00000393824 NHSQ6T4R5 1651 aa13.35□□□□□ -0.27
CUX1-204ENST00000393824 INTS5Q6P9B9 1019 aaKnown RBP13.34□□□□□ -0.27
CUX1-204ENST00000393824 ANKRD44Q8N8A2 993 aa13.34□□□□□ -0.27
CUX1-204ENST00000393824 CHAMP1Q96JM3 812 aa13.34□□□□□ -0.27
CUX1-204ENST00000393824 FEZ1Q99689 392 aa13.34□□□□□ -0.27
CUX1-204ENST00000393824 REC8O95072 547 aa13.34□□□□□ -0.27
CUX1-204ENST00000393824 BEND3Q5T5X7 828 aa13.34□□□□□ -0.27
CUX1-204ENST00000393824 DNAAF4Q8WXU2 420 aa13.34□□□□□ -0.27
CUX1-204ENST00000393824 DIAPH3Q9NSV4 1193 aa13.34□□□□□ -0.27
CUX1-204ENST00000393824 LRRC4BQ9NT99 713 aa13.34□□□□□ -0.27
CUX1-204ENST00000393824 MYH14Q7Z406 1995 aaKnown RBP13.33□□□□□ -0.28
CUX1-204ENST00000393824 KSR2Q6VAB6 950 aa13.33□□□□□ -0.28
CUX1-204ENST00000393824 ZNF830Q96NB3 372 aaPredicted RBP13.33□□□□□ -0.28
CUX1-204ENST00000393824 CTIFO43310 598 aaKnown RBP13.33□□□□□ -0.28
CUX1-204ENST00000393824 IGKV5-2P06315 115 aa13.33□□□□□ -0.28
CUX1-204ENST00000393824 CRKLP46109 303 aaKnown RBP13.33□□□□□ -0.28
CUX1-204ENST00000393824 MCM2P49736 904 aa13.33□□□□□ -0.28
CUX1-204ENST00000393824 FAM196AQ6ZSG2 479 aa13.33□□□□□ -0.28
CUX1-204ENST00000393824 ZBTB3Q9H5J0 574 aa13.33□□□□□ -0.28
CUX1-204ENST00000393824 CACNA1FO60840 1977 aa13.33□□□□□ -0.28
CUX1-204ENST00000393824 STARD3NLO95772 234 aa13.32□□□□□ -0.28
CUX1-204ENST00000393824 CUL4AQ13619 759 aa13.32□□□□□ -0.28
CUX1-204ENST00000393824 ANKRD13DQ6ZTN6 518 aa13.32□□□□□ -0.28
CUX1-204ENST00000393824 USP44Q9H0E7 712 aa13.32□□□□□ -0.28
CUX1-204ENST00000393824 TTC12Q9H892 705 aaPredicted RBP13.32□□□□□ -0.28
CUX1-204ENST00000393824 NBPF7P0C2Y1 421 aaPredicted RBP13.31□□□□□ -0.28
CUX1-204ENST00000393824 PROM2Q8N271 834 aa13.31□□□□□ -0.28
CUX1-204ENST00000393824 ATP5J2-PTCD1G3V325 749 aa13.31□□□□□ -0.28
CUX1-204ENST00000393824 ADCY5O95622 1261 aa13.31□□□□□ -0.28
CUX1-204ENST00000393824 INTS4Q96HW7 963 aaKnown RBP13.31□□□□□ -0.28
CUX1-204ENST00000393824 TMX3Q96JJ7 454 aa13.31□□□□□ -0.28
CUX1-204ENST00000393824 RIC3Q7Z5B4 369 aa13.3□□□□□ -0.28
CUX1-204ENST00000393824 KIAA1524Q8TCG1 905 aa13.3□□□□□ -0.28
CUX1-204ENST00000393824 USP25Q9UHP3 1055 aa13.3□□□□□ -0.28
CUX1-204ENST00000393824 SPDYE4A6NLX3 237 aa13.3□□□□□ -0.28
CUX1-204ENST00000393824 SDSP20132 328 aa13.3□□□□□ -0.28
CUX1-204ENST00000393824 HLFQ16534 295 aa13.3□□□□□ -0.28
CUX1-204ENST00000393824 SMARCC1Q92922 1105 aaPredicted RBP13.3□□□□□ -0.28
CUX1-204ENST00000393824 TEX13AQ9BXU3 409 aaPredicted RBP13.3□□□□□ -0.28
CUX1-204ENST00000393824 CCNL1Q9UK58 526 aaPredicted RBP13.3□□□□□ -0.28
CUX1-204ENST00000393824 TBC1D2BQ9UPU7 963 aa13.3□□□□□ -0.28
CUX1-204ENST00000393824 FAM177BA6PVY3 158 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 CCT4P50991 539 aaKnown RBP13.29□□□□□ -0.28
CUX1-204ENST00000393824 MYD88Q99836 296 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 OSBPL3Q9H4L5 887 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 OGFRQ9NZT2 677 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 ATP10DQ9P241 1426 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 ERC2O15083 957 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 TPM3P06753 285 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 CHAF1AQ13111 956 aaPredicted RBP13.29□□□□□ -0.28
CUX1-204ENST00000393824 C17orf53Q8N3J3 647 aaPredicted RBP13.29□□□□□ -0.28
CUX1-204ENST00000393824 SRCIN1Q9C0H9 1055 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 CCDC87Q9NVE4 849 aa13.29□□□□□ -0.28
CUX1-204ENST00000393824 RIOK3O14730 519 aaKnown RBP13.28□□□□□ -0.28
CUX1-204ENST00000393824 U2AF2P26368 475 aaKnown RBP eCLIP13.28□□□□□ -0.281e-7■■■■■ 27.9
CUX1-204ENST00000393824 EIF5P55010 431 aaKnown RBP13.28□□□□□ -0.28
CUX1-204ENST00000393824 SYCP1Q15431 976 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 CHMP4AQ9BY43 222 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 PXDNLA1KZ92 1463 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 KDM4AO75164 1064 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 GABPB1Q06547 395 aaPredicted RBP13.28□□□□□ -0.28
CUX1-204ENST00000393824 CEP85Q6P2H3 762 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 C16orf71Q8IYS4 520 aaPredicted RBP13.28□□□□□ -0.28
CUX1-204ENST00000393824 PLCD3Q8N3E9 789 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 TMEM87AQ8NBN3 555 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 PLBD2Q8NHP8 589 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 METTL22Q9BUU2 404 aaPredicted RBP13.28□□□□□ -0.28
CUX1-204ENST00000393824 UTRNP46939 3433 aa13.28□□□□□ -0.28
CUX1-204ENST00000393824 NEURL1BA8MQ27 555 aa13.27□□□□□ -0.28
CUX1-204ENST00000393824 VGLL3A8MV65 326 aa13.27□□□□□ -0.28
CUX1-204ENST00000393824 FOXD4L5Q5VV16 416 aaPredicted RBP13.27□□□□□ -0.28
CUX1-204ENST00000393824 FOXD4L4Q8WXT5 416 aaPredicted RBP13.27□□□□□ -0.28
CUX1-204ENST00000393824 COL5A3P25940 1745 aaPredicted RBP13.27□□□□□ -0.29
CUX1-204ENST00000393824 GADD45BO75293 160 aaPredicted RBP13.27□□□□□ -0.29
CUX1-204ENST00000393824 DDX58O95786 925 aaKnown RBP13.27□□□□□ -0.29
CUX1-204ENST00000393824 NEK4P51957 841 aa13.27□□□□□ -0.29
CUX1-204ENST00000393824 CCDC183Q5T5S1 534 aa13.27□□□□□ -0.29
CUX1-204ENST00000393824 MPNDQ8N594 471 aa13.27□□□□□ -0.29
CUX1-204ENST00000393824 LRRFIP2Q9Y608 721 aaKnown RBP13.27□□□□□ -0.29
CUX1-204ENST00000393824 HMMRO75330 724 aa13.26□□□□□ -0.29
CUX1-204ENST00000393824 IL6STP40189 918 aaPredicted RBP13.26□□□□□ -0.29
CUX1-204ENST00000393824 USP48Q86UV5 1035 aa13.26□□□□□ -0.29
CUX1-204ENST00000393824 LINS1Q8NG48 757 aa13.26□□□□□ -0.29
CUX1-204ENST00000393824 IL17RAQ96F46 866 aa13.26□□□□□ -0.29
CUX1-204ENST00000393824 KAZALD1Q96I82 304 aa13.26□□□□□ -0.29
CUX1-204ENST00000393824 ARFGEF2Q9Y6D5 1785 aa13.26□□□□□ -0.29
CUX1-204ENST00000393824 LY75O60449 1722 aa13.26□□□□□ -0.29
CUX1-204ENST00000393824 MX1P20591 662 aa13.25□□□□□ -0.29
CUX1-204ENST00000393824 NUP188Q5SRE5 1749 aa13.25□□□□□ -0.29
CUX1-204ENST00000393824 EPB41L2O43491 1005 aaKnown RBP13.25□□□□□ -0.29
CUX1-204ENST00000393824 ANAPC15P60006 121 aa13.25□□□□□ -0.29
CUX1-204ENST00000393824 DZIP3Q86Y13 1208 aaKnown RBP13.25□□□□□ -0.29
CUX1-204ENST00000393824 SYNE4Q8N205 404 aa13.25□□□□□ -0.29
CUX1-204ENST00000393824 CICQ96RK0 1608 aaPredicted RBP13.25□□□□□ -0.29
CUX1-204ENST00000393824 PNMA6EA0A0J9YXQ4 647 aa13.24□□□□□ -0.29
CUX1-204ENST00000393824 APBA3O96018 575 aa13.24□□□□□ -0.29
CUX1-204ENST00000393824 GPTP24298 496 aa13.24□□□□□ -0.29
CUX1-204ENST00000393824 GCKRQ14397 625 aa13.24□□□□□ -0.29
CUX1-204ENST00000393824 MAP3K15Q6ZN16 1313 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms