RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 PTPN12Q05209 780 aaKnown RBP16.88■□□□□ 0.29
USF1-202ENST00000368020 TM6SF1Q9BZW5 370 aa16.88■□□□□ 0.29
USF1-202ENST00000368020 SIL1Q9H173 461 aa16.88■□□□□ 0.29
USF1-202ENST00000368020 ZKSCAN1P17029 563 aaPredicted RBP16.87■□□□□ 0.29
USF1-202ENST00000368020 ATP5JP18859 108 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 EPHA10Q5JZY3 1008 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 SLC27A3Q5K4L6 730 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 GPR108Q9NPR9 543 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 ITPK1Q13572 414 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 TNNI3KQ59H18 835 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 KCNB2Q92953 911 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 SNX14Q9Y5W7 946 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 FPGT-TNNI3KV9GXZ4 949 aa16.87■□□□□ 0.29
USF1-202ENST00000368020 SPEF2Q9C093 1822 aa16.86■□□□□ 0.29
USF1-202ENST00000368020 FSD2A1L4K1 749 aa16.86■□□□□ 0.29
USF1-202ENST00000368020 ATP5J2-PTCD1G3V325 749 aa16.86■□□□□ 0.29
USF1-202ENST00000368020 RNF20Q5VTR2 975 aa16.86■□□□□ 0.29
USF1-202ENST00000368020 CCDC8Q9H0W5 538 aaPredicted RBP16.86■□□□□ 0.29
USF1-202ENST00000368020 IL25Q9H293 177 aa16.86■□□□□ 0.29
USF1-202ENST00000368020 CCNL1Q9UK58 526 aaPredicted RBP16.86■□□□□ 0.29
USF1-202ENST00000368020 FBXO3Q9UK99 471 aa16.86■□□□□ 0.29
USF1-202ENST00000368020 CCDC171Q6TFL3 1326 aa16.86■□□□□ 0.29
USF1-202ENST00000368020 COL5A3P25940 1745 aaPredicted RBP16.85■□□□□ 0.29
USF1-202ENST00000368020 A1BGP04217 495 aa16.85■□□□□ 0.29
USF1-202ENST00000368020 PIP4K2AP48426 406 aaPredicted RBP16.85■□□□□ 0.29
USF1-202ENST00000368020 TRIM28Q13263 835 aaKnown RBP16.85■□□□□ 0.29
USF1-202ENST00000368020 KLHL40Q2TBA0 621 aa16.85■□□□□ 0.29
USF1-202ENST00000368020 RC3H1Q5TC82 1133 aaKnown RBP16.85■□□□□ 0.29
USF1-202ENST00000368020 FSD1Q9BTV5 496 aa16.85■□□□□ 0.29
USF1-202ENST00000368020 KIF6Q6ZMV9 814 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 ZGPATQ8N5A5 531 aaKnown RBP16.84■□□□□ 0.29
USF1-202ENST00000368020 CCDC87Q9NVE4 849 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 MYH14Q7Z406 1995 aaKnown RBP16.84■□□□□ 0.29
USF1-202ENST00000368020 CNTNAP4Q9C0A0 1308 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 RGPD3A6NKT7 1758 aaPredicted RBP16.84■□□□□ 0.29
USF1-202ENST00000368020 RGPD4Q7Z3J3 1758 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 CIAO1O76071 339 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 APBA3O96018 575 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 PDIA4P13667 645 aaKnown RBP16.84■□□□□ 0.29
USF1-202ENST00000368020 PSMA5P28066 241 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 IL6STP40189 918 aaPredicted RBP16.84■□□□□ 0.29
USF1-202ENST00000368020 IL15P40933 162 aaPredicted RBP16.84■□□□□ 0.29
USF1-202ENST00000368020 CRKLP46109 303 aaKnown RBP16.84■□□□□ 0.29
USF1-202ENST00000368020 FOXO4P98177 505 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 LMBR1LQ6UX01 489 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 TTLL7Q6ZT98 887 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 TNS1Q9HBL0 1735 aaKnown RBP16.84■□□□□ 0.29
USF1-202ENST00000368020 HMG20BQ9P0W2 317 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 ANKRD36CQ5JPF3 1778 aa16.84■□□□□ 0.29
USF1-202ENST00000368020 TAF1LQ8IZX4 1826 aa16.83■□□□□ 0.29
USF1-202ENST00000368020 RREB1Q92766 1687 aa16.83■□□□□ 0.29
USF1-202ENST00000368020 MRE11P49959 708 aa16.83■□□□□ 0.28
USF1-202ENST00000368020 VPS53Q5VIR6 699 aa16.83■□□□□ 0.28
USF1-202ENST00000368020 INTS5Q6P9B9 1019 aaKnown RBP16.83■□□□□ 0.28
USF1-202ENST00000368020 ZSCAN31Q96LW9 406 aaPredicted RBP16.83■□□□□ 0.28
USF1-202ENST00000368020 TTC14Q96N46 770 aa16.83■□□□□ 0.28
USF1-202ENST00000368020 UPF3BQ9BZI7 483 aaKnown RBP16.83■□□□□ 0.28
USF1-202ENST00000368020 LIMCH1Q9UPQ0 1083 aa16.83■□□□□ 0.28
USF1-202ENST00000368020 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.83■□□□□ 0.28
USF1-202ENST00000368020 TFCP2Q12800 502 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 TCIRG1Q13488 830 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 HSP90AB3PQ58FF7 597 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 CCDC125Q86Z20 511 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 MAP4K1Q92918 833 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 ISCA1Q9BUE6 129 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 SH2B1Q9NRF2 756 aaPredicted RBP16.82■□□□□ 0.28
USF1-202ENST00000368020 CYP46A1Q9Y6A2 500 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 MED23Q9ULK4 1368 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 KCNJ4P48050 445 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 NECTIN1Q15223 517 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 LINC00116Q8NCU8 138 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 KLHDC4Q8TBB5 520 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 BOLA2Q9H3K6 86 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 TLR7Q9NYK1 1049 aaKnown RBP16.82■□□□□ 0.28
USF1-202ENST00000368020 DBNLQ9UJU6 430 aaKnown RBP16.82■□□□□ 0.28
USF1-202ENST00000368020 ZBTB1Q9Y2K1 713 aa16.82■□□□□ 0.28
USF1-202ENST00000368020 BRD1O95696 1058 aa16.81■□□□□ 0.28
USF1-202ENST00000368020 EIF5P55010 431 aaKnown RBP16.81■□□□□ 0.28
USF1-202ENST00000368020 NMIQ13287 307 aaPredicted RBP16.81■□□□□ 0.28
USF1-202ENST00000368020 TXNRD1Q16881 649 aa16.81■□□□□ 0.28
USF1-202ENST00000368020 PROM2Q8N271 834 aa16.81■□□□□ 0.28
USF1-202ENST00000368020 HAUS7Q99871 368 aa16.81■□□□□ 0.28
USF1-202ENST00000368020 PLA2G12BQ9BX93 195 aa16.81■□□□□ 0.28
USF1-202ENST00000368020 GZF1Q9H116 711 aaPredicted RBP16.81■□□□□ 0.28
USF1-202ENST00000368020 CHMP3Q9Y3E7 222 aa16.81■□□□□ 0.28
USF1-202ENST00000368020 DDX49Q9Y6V7 483 aaKnown RBP16.81■□□□□ 0.28
USF1-202ENST00000368020 WDR33Q9C0J8 1336 aaKnown RBP16.81■□□□□ 0.28
USF1-202ENST00000368020 CASTP20810 708 aaKnown RBP16.8■□□□□ 0.28
USF1-202ENST00000368020 MCTP1Q6DN14 999 aa16.8■□□□□ 0.28
USF1-202ENST00000368020 ZBTB3Q9H5J0 574 aa16.8■□□□□ 0.28
USF1-202ENST00000368020 ZSWIM6Q9HCJ5 1215 aa16.8■□□□□ 0.28
USF1-202ENST00000368020 LRRC4BQ9NT99 713 aa16.8■□□□□ 0.28
USF1-202ENST00000368020 MYH3P11055 1940 aa16.8■□□□□ 0.28
USF1-202ENST00000368020 PCCAP05165 728 aaPredicted RBP16.79■□□□□ 0.28
USF1-202ENST00000368020 KRT32Q14532 448 aa16.79■□□□□ 0.28
USF1-202ENST00000368020 ANKRD1Q15327 319 aa16.79■□□□□ 0.28
USF1-202ENST00000368020 RBM8AQ9Y5S9 174 aaKnown RBP16.79■□□□□ 0.28
USF1-202ENST00000368020 EYA2O00167 538 aa16.79■□□□□ 0.28
USF1-202ENST00000368020 AK2P54819 239 aa16.79■□□□□ 0.28
USF1-202ENST00000368020 KCNQ4P56696 695 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms