RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SASH1O94885 1247 aa16.09■□□□□ 0.17
SQSTM1-201ENST00000360718 ZNF827Q17R98 1081 aa16.09■□□□□ 0.17
SQSTM1-201ENST00000360718 TRAPPC3LQ5T215 181 aa16.09■□□□□ 0.17
SQSTM1-201ENST00000360718 BICDL1Q6ZP65 573 aa16.09■□□□□ 0.17
SQSTM1-201ENST00000360718 HSCBQ8IWL3 235 aa16.09■□□□□ 0.17
SQSTM1-201ENST00000360718 COPRSQ9NQ92 184 aa16.09■□□□□ 0.17
SQSTM1-201ENST00000360718 TUBGCP6Q96RT7 1819 aa16.09■□□□□ 0.17
SQSTM1-201ENST00000360718 NUTM1Q86Y26 1132 aa16.08■□□□□ 0.17
SQSTM1-201ENST00000360718 COL24A1Q17RW2 1714 aa16.08■□□□□ 0.16
SQSTM1-201ENST00000360718 ZPR1O75312 459 aa16.08■□□□□ 0.16
SQSTM1-201ENST00000360718 CSF1RP07333 972 aa16.08■□□□□ 0.16
SQSTM1-201ENST00000360718 PARP10Q53GL7 1025 aa16.08■□□□□ 0.16
SQSTM1-201ENST00000360718 ZNF594Q96JF6 807 aaPredicted RBP16.08■□□□□ 0.16
SQSTM1-201ENST00000360718 UTP14AQ9BVJ6 771 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-201ENST00000360718 RTN4Q9NQC3 1192 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-201ENST00000360718 RGPD3A6NKT7 1758 aaPredicted RBP16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 RGPD4Q7Z3J3 1758 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 RGL2O15211 777 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 HCLS1P14317 486 aaPredicted RBP16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 RFC4P35249 363 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 BMP2KLQ5H9B9 411 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 TSHZ3Q63HK5 1081 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 TTLL11Q8NHH1 800 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 SH3TC1Q8TE82 1336 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 AK9Q5TCS8 1911 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 EIF5BO60841 1220 aaKnown RBP16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 RBM25P49756 843 aaKnown RBP16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 LAMB2P55268 1798 aa16.07■□□□□ 0.16
SQSTM1-201ENST00000360718 CASZ1Q86V15 1759 aa16.06■□□□□ 0.16
SQSTM1-201ENST00000360718 GSPT1P15170 499 aaKnown RBP16.06■□□□□ 0.16
SQSTM1-201ENST00000360718 CTSWP56202 376 aa16.06■□□□□ 0.16
SQSTM1-201ENST00000360718 CLASRPQ8N2M8 674 aaKnown RBP16.06■□□□□ 0.16
SQSTM1-201ENST00000360718 AKT1S1Q96B36 256 aa16.06■□□□□ 0.16
SQSTM1-201ENST00000360718 GREM2Q9H772 168 aa16.06■□□□□ 0.16
SQSTM1-201ENST00000360718 PDE8AO60658 829 aa16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 HSP90B1P14625 803 aaKnown RBP16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 ADRA2BP18089 450 aa16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 PDE1AP54750 535 aa16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 SSFA2P28290 1259 aa16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 MCM4P33991 863 aa16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 EN1Q05925 392 aaPredicted RBP16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 ERFEQ4G0M1 354 aa16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 ATG9AQ7Z3C6 839 aa16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 SNX21Q969T3 373 aa16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 PUS3Q9BZE2 481 aaKnown RBP16.05■□□□□ 0.16
SQSTM1-201ENST00000360718 MX1P20591 662 aa16.04■□□□□ 0.16
SQSTM1-201ENST00000360718 EZH2Q15910 746 aaKnown RBP16.04■□□□□ 0.16
SQSTM1-201ENST00000360718 LRRC24Q50LG9 513 aa16.04■□□□□ 0.16
SQSTM1-201ENST00000360718 TTC22Q5TAA0 569 aa16.04■□□□□ 0.16
SQSTM1-201ENST00000360718 ABCC12Q96J65 1359 aa16.04■□□□□ 0.16
SQSTM1-201ENST00000360718 COL4A1P02462 1669 aa16.04■□□□□ 0.16
SQSTM1-201ENST00000360718 GYS1P13807 737 aa16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 CCDC57Q2TAC2 916 aa16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 C3orf67Q6ZVT6 689 aa16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 CAMKK2Q96RR4 588 aa16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 OSBPL3Q9H4L5 887 aa16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 NFIXQ14938 502 aa16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 SPRYD3Q8NCJ5 442 aa16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 EAF2Q96CJ1 260 aaPredicted RBP16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 SETDB2Q96T68 719 aa16.03■□□□□ 0.16
SQSTM1-201ENST00000360718 ITGA6P23229 1130 aa16.02■□□□□ 0.16
SQSTM1-201ENST00000360718 TFCP2Q12800 502 aa16.02■□□□□ 0.16
SQSTM1-201ENST00000360718 CCDC24Q8N4L8 307 aa16.02■□□□□ 0.16
SQSTM1-201ENST00000360718 TLR7Q9NYK1 1049 aaKnown RBP16.02■□□□□ 0.15
SQSTM1-201ENST00000360718 TFCP2L1Q9NZI6 479 aa16.02■□□□□ 0.15
SQSTM1-201ENST00000360718 TAF1P21675 1872 aa16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 IFIT2P09913 472 aaKnown RBP16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 IFIT5Q13325 482 aaKnown RBP16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 TAF7LQ5H9L4 462 aa16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 GPATCH3Q96I76 525 aa16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 ANO8Q9HCE9 1232 aaPredicted RBP16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 STAP2Q9UGK3 403 aa16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 AOX1Q06278 1338 aa16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 EYA2O00167 538 aa16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 DEFB132Q7Z7B7 95 aa16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 AACSQ86V21 672 aa16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 COL23A1Q86Y22 540 aaPredicted RBP16.01■□□□□ 0.15
SQSTM1-201ENST00000360718 NBPF5PQ86XG9 351 aaPredicted RBP16■□□□□ 0.15
SQSTM1-201ENST00000360718 SEC31BQ9NQW1 1179 aa16■□□□□ 0.15
SQSTM1-201ENST00000360718 DDX11L8A8MPP1 907 aa15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 FAM43AQ8N2R8 423 aa15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 PI4K2BQ8TCG2 481 aa15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 CCDC8Q9H0W5 538 aaPredicted RBP15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 TNRC6CQ9HCJ0 1690 aaKnown RBP15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 LRP5O75197 1615 aa15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 SPEF2Q9C093 1822 aa15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 NYXQ9GZU5 481 aa15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 FBXO3Q9UK99 471 aa15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 CIZ1Q9ULV3 898 aaPredicted RBP15.99■□□□□ 0.15
SQSTM1-201ENST00000360718 PNPLA7Q6ZV29 1317 aa15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 ANKRD18BA2A2Z9 1011 aa15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 CIAO1O76071 339 aa15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 SDSP20132 328 aa15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 GTF2E1P29083 439 aaPredicted RBP15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 IL15P40933 162 aaPredicted RBP15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 CARMIL3Q8ND23 1372 aa15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 TTC41PQ6P2S7 1318 aa15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 CDC45O75419 566 aa15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 TNNI3KQ59H18 835 aa15.98■□□□□ 0.15
SQSTM1-201ENST00000360718 SLC10A5Q5PT55 438 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms