RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SASH3O75995 380 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 MAP3K6O95382 1288 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 RARAP10276 462 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 MAP2K3P46734 347 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 NFX1Q12986 1120 aaKnown RBP5.8□□□□□ -1.48
HMGB1-201ENST00000326004 GAS6Q14393 721 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 TTC39BQ5VTQ0 682 aaPredicted RBP5.8□□□□□ -1.48
HMGB1-201ENST00000326004 GPR161Q8N6U8 529 aaKnown RBP5.8□□□□□ -1.48
HMGB1-201ENST00000326004 PMEPA1Q969W9 287 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 SLC30A3Q99726 388 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 DNAJC25Q9H1X3 360 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 PRR12Q9ULL5 1215 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 PHACTR2O75167 634 aa5.79□□□□□ -1.48
HMGB1-201ENST00000326004 NFKB1P19838 968 aa5.79□□□□□ -1.48
HMGB1-201ENST00000326004 TARSP26639 723 aaKnown RBP5.79□□□□□ -1.48
HMGB1-201ENST00000326004 SOX18P35713 384 aa5.79□□□□□ -1.48
HMGB1-201ENST00000326004 GRIN2CQ14957 1233 aa5.79□□□□□ -1.48
HMGB1-201ENST00000326004 EAPPQ56P03 285 aaPredicted RBP5.79□□□□□ -1.48
HMGB1-201ENST00000326004 ZNF468Q5VIY5 522 aaPredicted RBP5.79□□□□□ -1.48
HMGB1-201ENST00000326004 KRT25Q7Z3Z0 450 aa5.79□□□□□ -1.48
HMGB1-201ENST00000326004 OR13H1Q8NG92 308 aa5.79□□□□□ -1.48
HMGB1-201ENST00000326004 BHMTQ93088 406 aa5.79□□□□□ -1.48
HMGB1-201ENST00000326004 TMEM63CQ9P1W3 806 aa5.79□□□□□ -1.48
HMGB1-201ENST00000326004 ERBB4Q15303 1308 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 C2CD2LO14523 706 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 CPNE3O75131 537 aaKnown RBP5.78□□□□□ -1.48
HMGB1-201ENST00000326004 SIN3BO75182 1162 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 P4HBP07237 508 aaKnown RBP5.78□□□□□ -1.48
HMGB1-201ENST00000326004 PSAPP07602 524 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 ARAFP10398 606 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 HOXD8P13378 290 aaPredicted RBP5.78□□□□□ -1.48
HMGB1-201ENST00000326004 ATP2B2Q01814 1243 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 ENOX2Q16206 610 aaKnown RBP5.78□□□□□ -1.48
HMGB1-201ENST00000326004 PCSK7Q16549 785 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 FBXO33Q7Z6M2 555 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 CSRNP1Q96S65 589 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 BCL2L13Q9BXK5 485 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 COL25A1Q9BXS0 654 aaPredicted RBP5.78□□□□□ -1.48
HMGB1-201ENST00000326004 TLR7Q9NYK1 1049 aaKnown RBP5.78□□□□□ -1.48
HMGB1-201ENST00000326004 ZFATQ9P243 1243 aa5.78□□□□□ -1.48
HMGB1-201ENST00000326004 FOXD3Q9UJU5 478 aaPredicted RBP5.78□□□□□ -1.48
HMGB1-201ENST00000326004 RBM47A0AV96 593 aaKnown RBP5.77□□□□□ -1.49
HMGB1-201ENST00000326004 PHF20L1A8MW92 1017 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 MMP20O60882 483 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 MAPK8P45983 427 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 PLAURQ03405 335 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 SRSF11Q05519 484 aaKnown RBP5.77□□□□□ -1.49
HMGB1-201ENST00000326004 ORC1Q13415 861 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 ZNF326Q5BKZ1 582 aaKnown RBP5.77□□□□□ -1.49
HMGB1-201ENST00000326004 ALG1LQ6GMV1 187 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 RAB44Q7Z6P3 723 aaPredicted RBP5.77□□□□□ -1.49
HMGB1-201ENST00000326004 SYT9Q86SS6 491 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 FBF1Q8TES7 1133 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 ZFYVE28Q9HCC9 887 aa5.77□□□□□ -1.49
HMGB1-201ENST00000326004 PNMA6FA0A0J9YX94 578 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 EIF1AYO14602 144 aaKnown RBP5.76□□□□□ -1.49
HMGB1-201ENST00000326004 LDHBP07195 334 aaKnown RBP5.76□□□□□ -1.49
HMGB1-201ENST00000326004 CES1P23141 567 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 ADH6P28332 368 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 NRLP54845 237 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 DHX32Q7L7V1 743 aaKnown RBP5.76□□□□□ -1.49
HMGB1-201ENST00000326004 C1orf127Q8N9H9 656 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 FOXD4L4Q8WXT5 416 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-201ENST00000326004 TNFRSF25Q93038 417 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 BCL11AQ9H165 835 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 CHRDQ9H2X0 955 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 CNTN3Q9P232 1028 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 GDF2Q9UK05 429 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-201ENST00000326004 IGF1RP08069 1367 aa5.76□□□□□ -1.49
HMGB1-201ENST00000326004 PRPF40AO75400 957 aaKnown RBP5.75□□□□□ -1.49
HMGB1-201ENST00000326004 WFS1O76024 890 aa5.75□□□□□ -1.49
HMGB1-201ENST00000326004 ITGAEP38570 1179 aa5.75□□□□□ -1.49
HMGB1-201ENST00000326004 GPLD1P80108 840 aa5.75□□□□□ -1.49
HMGB1-201ENST00000326004 HYAL2Q12891 473 aa5.75□□□□□ -1.49
HMGB1-201ENST00000326004 RNFT1Q5M7Z0 435 aa5.75□□□□□ -1.49
HMGB1-201ENST00000326004 GOLGA6L1Q8N7Z2 621 aa5.75□□□□□ -1.49
HMGB1-201ENST00000326004 GIPC2Q8TF65 315 aa5.75□□□□□ -1.49
HMGB1-201ENST00000326004 ADARB2-AS1A8MUL3 147 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 EREGO14944 169 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 KIF4AO95239 1232 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 EDN3P14138 238 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 PCBP4P57723 403 aaKnown RBP5.74□□□□□ -1.49
HMGB1-201ENST00000326004 SLCO4C1Q6ZQN7 724 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 GALNT12Q8IXK2 581 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 TRPM4Q8TD43 1214 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 CNTNAP3BQ96NU0 1288 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 OXCT2Q9BYC2 517 aaPredicted RBP5.74□□□□□ -1.49
HMGB1-201ENST00000326004 CNTNAP3Q9BZ76 1288 aa5.74□□□□□ -1.49
HMGB1-201ENST00000326004 UBE2OQ9C0C9 1292 aaKnown RBP5.74□□□□□ -1.49
HMGB1-201ENST00000326004 DNAJB12Q9NXW2 375 aaKnown RBP5.74□□□□□ -1.49
HMGB1-201ENST00000326004 ADAMTS2O95450 1211 aa5.73□□□□□ -1.49
HMGB1-201ENST00000326004 CYP2E1P05181 493 aaPredicted RBP5.73□□□□□ -1.49
HMGB1-201ENST00000326004 ZNF16P17020 682 aaPredicted RBP5.73□□□□□ -1.49
HMGB1-201ENST00000326004 KRT76Q01546 638 aa5.73□□□□□ -1.49
HMGB1-201ENST00000326004 CCDC74AQ96AQ1 378 aa5.73□□□□□ -1.49
HMGB1-201ENST00000326004 ZNF775Q96BV0 537 aaPredicted RBP5.73□□□□□ -1.49
HMGB1-201ENST00000326004 SPACA7Q96KW9 195 aa5.73□□□□□ -1.49
HMGB1-201ENST00000326004 FRMD6Q96NE9 622 aa5.73□□□□□ -1.49
HMGB1-201ENST00000326004 MDFIQ99750 246 aa5.73□□□□□ -1.49
HMGB1-201ENST00000326004 KLF15Q9UIH9 416 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms