RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 FBXW7Q969H0 707 aa23.58■■□□□ 1.37
CRLF3-201ENST00000324238 ZNF496Q96IT1 587 aaPredicted RBP23.58■■□□□ 1.37
CRLF3-201ENST00000324238 FTOQ9C0B1 505 aaKnown RBP eCLIP23.58■■□□□ 1.37
CRLF3-201ENST00000324238 TNMDQ9H2S6 317 aa23.58■■□□□ 1.36
CRLF3-201ENST00000324238 NAP1L2Q9ULW6 460 aaPredicted RBP23.58■■□□□ 1.36
CRLF3-201ENST00000324238 CACNA1FO60840 1977 aa23.58■■□□□ 1.36
CRLF3-201ENST00000324238 RGPD2P0DJD1 1756 aa23.57■■□□□ 1.36
CRLF3-201ENST00000324238 HSP90B1P14625 803 aaKnown RBP23.57■■□□□ 1.36
CRLF3-201ENST00000324238 MAP3K11Q16584 847 aa23.57■■□□□ 1.36
CRLF3-201ENST00000324238 NR1I2O75469 434 aa23.57■■□□□ 1.36
CRLF3-201ENST00000324238 PDIA6Q15084 440 aa23.57■■□□□ 1.36
CRLF3-201ENST00000324238 RPS6KB1P23443 525 aa23.56■■□□□ 1.36
CRLF3-201ENST00000324238 ZNF790Q6PG37 636 aa23.56■■□□□ 1.36
CRLF3-201ENST00000324238 DDX46Q7L014 1031 aaKnown RBP23.56■■□□□ 1.36
CRLF3-201ENST00000324238 BICD2Q8TD16 824 aa23.56■■□□□ 1.36
CRLF3-201ENST00000324238 TAOK2Q9UL54 1235 aa23.56■■□□□ 1.36
CRLF3-201ENST00000324238 TFCP2Q12800 502 aa23.55■■□□□ 1.36
CRLF3-201ENST00000324238 CCDC186Q7Z3E2 898 aa23.55■■□□□ 1.36
CRLF3-201ENST00000324238 ERCC4Q92889 916 aaPredicted RBP23.55■■□□□ 1.36
CRLF3-201ENST00000324238 A0A0G2JLW4 131 aa23.55■■□□□ 1.36
CRLF3-201ENST00000324238 PSMA5P28066 241 aa23.55■■□□□ 1.36
CRLF3-201ENST00000324238 UBE3BQ7Z3V4 1068 aa23.55■■□□□ 1.36
CRLF3-201ENST00000324238 KIAA1524Q8TCG1 905 aa23.55■■□□□ 1.36
CRLF3-201ENST00000324238 KCNB2Q92953 911 aa23.55■■□□□ 1.36
CRLF3-201ENST00000324238 CBX8Q9HC52 389 aa23.55■■□□□ 1.36
CRLF3-201ENST00000324238 DBNLQ9UJU6 430 aaKnown RBP23.55■■□□□ 1.36
CRLF3-201ENST00000324238 COL15A1P39059 1388 aa23.54■■□□□ 1.36
CRLF3-201ENST00000324238 LEO1Q8WVC0 666 aaPredicted RBP23.54■■□□□ 1.36
CRLF3-201ENST00000324238 DNAJC25Q9H1X3 360 aa23.54■■□□□ 1.36
CRLF3-201ENST00000324238 FER1L4A9Z1Z3 1794 aa23.54■■□□□ 1.36
CRLF3-201ENST00000324238 TAF5LO75529 589 aa23.54■■□□□ 1.36
CRLF3-201ENST00000324238 BRF1Q92994 677 aa23.54■■□□□ 1.36
CRLF3-201ENST00000324238 PGBD1Q96JS3 809 aa23.54■■□□□ 1.36
CRLF3-201ENST00000324238 ZNF330Q9Y3S2 320 aaPredicted RBP23.54■■□□□ 1.36
CRLF3-201ENST00000324238 LTN1O94822 1766 aa23.53■■□□□ 1.36
CRLF3-201ENST00000324238 DDX58O95786 925 aaKnown RBP23.53■■□□□ 1.36
CRLF3-201ENST00000324238 FGD1P98174 961 aa23.53■■□□□ 1.36
CRLF3-201ENST00000324238 DDX21Q9NR30 783 aaKnown RBP eCLIP23.53■■□□□ 1.36
CRLF3-201ENST00000324238 Q6ZUG5 572 aa23.53■■□□□ 1.36
CRLF3-201ENST00000324238 CHST3Q7LGC8 479 aa23.53■■□□□ 1.36
CRLF3-201ENST00000324238 DBNDD2Q9BQY9 259 aa23.53■■□□□ 1.36
CRLF3-201ENST00000324238 CBX1P83916 185 aa23.52■■□□□ 1.36
CRLF3-201ENST00000324238 GUCY1B3Q02153 619 aa23.52■■□□□ 1.36
CRLF3-201ENST00000324238 TRIM5Q9C035 493 aa23.52■■□□□ 1.36
CRLF3-201ENST00000324238 MARF1Q9Y4F3 1742 aaKnown RBP23.52■■□□□ 1.36
CRLF3-201ENST00000324238 RNF20Q5VTR2 975 aa23.52■■□□□ 1.36
CRLF3-201ENST00000324238 FAM200AQ8TCP9 573 aa23.52■■□□□ 1.36
CRLF3-201ENST00000324238 NEURL1BA8MQ27 555 aa23.52■■□□□ 1.36
CRLF3-201ENST00000324238 RIOK3O14730 519 aaKnown RBP23.52■■□□□ 1.36
CRLF3-201ENST00000324238 NEXNQ0ZGT2 675 aa23.52■■□□□ 1.36
CRLF3-201ENST00000324238 NPHP4O75161 1426 aaPredicted RBP23.51■■□□□ 1.35
CRLF3-201ENST00000324238 GCKRQ14397 625 aa23.51■■□□□ 1.35
CRLF3-201ENST00000324238 SPDYE4A6NLX3 237 aa23.5■■□□□ 1.35
CRLF3-201ENST00000324238 CCT2P78371 535 aaKnown RBP23.5■■□□□ 1.35
CRLF3-201ENST00000324238 C16orf45Q96MC5 204 aaPredicted RBP23.5■■□□□ 1.35
CRLF3-201ENST00000324238 BCL2L12Q9HB09 334 aa23.5■■□□□ 1.35
CRLF3-201ENST00000324238 MAP7D2Q96T17 732 aa23.5■■□□□ 1.35
CRLF3-201ENST00000324238 SPTLC3Q9NUV7 552 aa23.5■■□□□ 1.35
CRLF3-201ENST00000324238 KIF3AQ9Y496 699 aa23.5■■□□□ 1.35
CRLF3-201ENST00000324238 H3BQV1 296 aa23.49■■□□□ 1.35
CRLF3-201ENST00000324238 IFFO2Q5TF58 517 aa23.49■■□□□ 1.35
CRLF3-201ENST00000324238 ERBB3P21860 1342 aa23.49■■□□□ 1.35
CRLF3-201ENST00000324238 TTC5Q8N0Z6 440 aa23.49■■□□□ 1.35
CRLF3-201ENST00000324238 NFAT5O94916 1531 aa23.49■■□□□ 1.35
CRLF3-201ENST00000324238 ARID5BQ14865 1188 aa23.49■■□□□ 1.35
CRLF3-201ENST00000324238 NEUROD6Q96NK8 337 aa23.49■■□□□ 1.35
CRLF3-201ENST00000324238 NCOA5Q9HCD5 579 aaKnown RBP23.49■■□□□ 1.35
CRLF3-201ENST00000324238 CYP21A2P08686 494 aa23.48■■□□□ 1.35
CRLF3-201ENST00000324238 ANKRD13DQ6ZTN6 518 aa23.48■■□□□ 1.35
CRLF3-201ENST00000324238 NEK1Q96PY6 1258 aa23.48■■□□□ 1.35
CRLF3-201ENST00000324238 PDCP20941 246 aa23.48■■□□□ 1.35
CRLF3-201ENST00000324238 CCDC85AQ96PX6 553 aaPredicted RBP23.48■■□□□ 1.35
CRLF3-201ENST00000324238 TATP17735 454 aaPredicted RBP23.47■■□□□ 1.35
CRLF3-201ENST00000324238 NAA30Q147X3 362 aaPredicted RBP23.47■■□□□ 1.35
CRLF3-201ENST00000324238 SLC52A2Q9HAB3 445 aa23.47■■□□□ 1.35
CRLF3-201ENST00000324238 HIP1O00291 1037 aa23.47■■□□□ 1.35
CRLF3-201ENST00000324238 PPP4R3BQ5MIZ7 849 aa23.47■■□□□ 1.35
CRLF3-201ENST00000324238 PRIMPOLQ96LW4 560 aa23.47■■□□□ 1.35
CRLF3-201ENST00000324238 ZNF165P49910 485 aa23.46■■□□□ 1.35
CRLF3-201ENST00000324238 A0A087WZG4 1122 aa23.46■■□□□ 1.35
CRLF3-201ENST00000324238 TNNI3KQ59H18 835 aa23.46■■□□□ 1.35
CRLF3-201ENST00000324238 STOX1Q6ZVD7 989 aa23.46■■□□□ 1.35
CRLF3-201ENST00000324238 FPGT-TNNI3KV9GXZ4 949 aa23.46■■□□□ 1.35
CRLF3-201ENST00000324238 NPHP3Q7Z494 1330 aa23.46■■□□□ 1.35
CRLF3-201ENST00000324238 ADGRL3Q9HAR2 1447 aa23.46■■□□□ 1.35
CRLF3-201ENST00000324238 PTPN12Q05209 780 aaKnown RBP23.46■■□□□ 1.35
CRLF3-201ENST00000324238 SCAND2PQ9GZW5 306 aaPredicted RBP23.46■■□□□ 1.35
CRLF3-201ENST00000324238 MED23Q9ULK4 1368 aa23.45■■□□□ 1.35
CRLF3-201ENST00000324238 TIMM10P62072 90 aa23.45■■□□□ 1.34
CRLF3-201ENST00000324238 APOBRQ0VD83 1088 aa23.45■■□□□ 1.34
CRLF3-201ENST00000324238 SCRN1Q12765 414 aa23.45■■□□□ 1.34
CRLF3-201ENST00000324238 ATP2B3Q16720 1220 aa23.45■■□□□ 1.34
CRLF3-201ENST00000324238 CHMP4AQ9BY43 222 aa23.45■■□□□ 1.34
CRLF3-201ENST00000324238 PHKG2P15735 406 aa23.45■■□□□ 1.34
CRLF3-201ENST00000324238 RAB11FIP4Q86YS3 637 aa23.45■■□□□ 1.34
CRLF3-201ENST00000324238 HMGN5P82970 282 aaKnown RBP23.44■■□□□ 1.34
CRLF3-201ENST00000324238 ANKRD1Q15327 319 aa23.44■■□□□ 1.34
CRLF3-201ENST00000324238 GTF3C6Q969F1 213 aa23.44■■□□□ 1.34
CRLF3-201ENST00000324238 CYP27B1O15528 508 aa23.44■■□□□ 1.34
CRLF3-201ENST00000324238 CCDC144BQ3MJ40 725 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms