RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 PDIA4P13667 645 aaKnown RBP26.09■■□□□ 1.77
SHMT1-201ENST00000316694 PIP4K2AP48426 406 aaPredicted RBP26.09■■□□□ 1.77
SHMT1-201ENST00000316694 NLRP2Q9NX02 1062 aa26.09■■□□□ 1.77
SHMT1-201ENST00000316694 HMG20BQ9P0W2 317 aa26.09■■□□□ 1.77
SHMT1-201ENST00000316694 TAF5LO75529 589 aa26.08■■□□□ 1.77
SHMT1-201ENST00000316694 KLHL34Q8N239 644 aa26.08■■□□□ 1.77
SHMT1-201ENST00000316694 NFATC2IPQ8NCF5 419 aa26.08■■□□□ 1.77
SHMT1-201ENST00000316694 SPATA32Q96LK8 384 aa26.08■■□□□ 1.77
SHMT1-201ENST00000316694 ELP1O95163 1332 aa26.08■■□□□ 1.77
SHMT1-201ENST00000316694 CKAP2LQ8IYA6 745 aa26.07■■□□□ 1.76
SHMT1-201ENST00000316694 ARID3AQ99856 593 aa26.07■■□□□ 1.76
SHMT1-201ENST00000316694 METTL22Q9BUU2 404 aaPredicted RBP26.07■■□□□ 1.76
SHMT1-201ENST00000316694 DBNLQ9UJU6 430 aaKnown RBP26.07■■□□□ 1.76
SHMT1-201ENST00000316694 RAPGEF4Q8WZA2 1011 aa26.07■■□□□ 1.76
SHMT1-201ENST00000316694 SLC52A2Q9HAB3 445 aa26.07■■□□□ 1.76
SHMT1-201ENST00000316694 TFCP2Q12800 502 aa26.06■■□□□ 1.76
SHMT1-201ENST00000316694 MYRIPQ8NFW9 859 aa26.06■■□□□ 1.76
SHMT1-201ENST00000316694 SCAND2PQ9GZW5 306 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-201ENST00000316694 DACT1Q9NYF0 836 aa26.06■■□□□ 1.76
SHMT1-201ENST00000316694 C5P01031 1676 aa26.06■■□□□ 1.76
SHMT1-201ENST00000316694 CAMTA1Q9Y6Y1 1673 aa26.06■■□□□ 1.76
SHMT1-201ENST00000316694 TYRO3Q06418 890 aa26.06■■□□□ 1.76
SHMT1-201ENST00000316694 ALDH8A1Q9H2A2 487 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-201ENST00000316694 CHGBP05060 677 aa26.05■■□□□ 1.76
SHMT1-201ENST00000316694 FAM200AQ8TCP9 573 aa26.05■■□□□ 1.76
SHMT1-201ENST00000316694 DNAJC2Q99543 621 aaKnown RBP26.05■■□□□ 1.76
SHMT1-201ENST00000316694 TNMDQ9H2S6 317 aa26.05■■□□□ 1.76
SHMT1-201ENST00000316694 C1orf167Q5SNV9 1468 aa26.05■■□□□ 1.76
SHMT1-201ENST00000316694 TNNI3KQ59H18 835 aa26.05■■□□□ 1.76
SHMT1-201ENST00000316694 ANKRD13DQ6ZTN6 518 aa26.05■■□□□ 1.76
SHMT1-201ENST00000316694 MRVI1Q9Y6F6 885 aa26.05■■□□□ 1.76
SHMT1-201ENST00000316694 FPGT-TNNI3KV9GXZ4 949 aa26.05■■□□□ 1.76
SHMT1-201ENST00000316694 JAK2O60674 1132 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 TSGA10IPQ3SY00 556 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 CCDC129Q6ZRS4 1044 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 ZNF496Q96IT1 587 aaPredicted RBP26.04■■□□□ 1.76
SHMT1-201ENST00000316694 COL15A1P39059 1388 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 JCADQ9P266 1359 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 ATP5JP18859 108 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 UBE3BQ7Z3V4 1068 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 LUZP1Q86V48 1076 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 KCNF1Q9H3M0 494 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 COPRSQ9NQ92 184 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 SPTLC3Q9NUV7 552 aa26.04■■□□□ 1.76
SHMT1-201ENST00000316694 NPHP3Q7Z494 1330 aa26.03■■□□□ 1.76
SHMT1-201ENST00000316694 HSP90B1P14625 803 aaKnown RBP26.03■■□□□ 1.76
SHMT1-201ENST00000316694 LEO1Q8WVC0 666 aaPredicted RBP26.03■■□□□ 1.76
SHMT1-201ENST00000316694 PRIMPOLQ96LW4 560 aa26.03■■□□□ 1.76
SHMT1-201ENST00000316694 NEK1Q96PY6 1258 aa26.03■■□□□ 1.76
SHMT1-201ENST00000316694 MRC1P22897 1456 aa26.03■■□□□ 1.76
SHMT1-201ENST00000316694 ADAMTSL3P82987 1691 aa26.03■■□□□ 1.76
SHMT1-201ENST00000316694 KRT32Q14532 448 aa26.03■■□□□ 1.76
SHMT1-201ENST00000316694 ZMYND15Q9H091 742 aa26.03■■□□□ 1.76
SHMT1-201ENST00000316694 C19orf44Q9H6X5 657 aa26.03■■□□□ 1.76
SHMT1-201ENST00000316694 CCDC9Q9Y3X0 531 aaKnown RBP26.03■■□□□ 1.76
SHMT1-201ENST00000316694 KDM6AO15550 1401 aaPredicted RBP26.02■■□□□ 1.76
SHMT1-201ENST00000316694 PTPN12Q05209 780 aaKnown RBP26.02■■□□□ 1.76
SHMT1-201ENST00000316694 USPL1Q5W0Q7 1092 aa26.02■■□□□ 1.76
SHMT1-201ENST00000316694 SEC62Q99442 399 aaKnown RBP26.02■■□□□ 1.76
SHMT1-201ENST00000316694 PYCARDQ9ULZ3 195 aa26.02■■□□□ 1.76
SHMT1-201ENST00000316694 USP16Q9Y5T5 823 aa26.02■■□□□ 1.76
SHMT1-201ENST00000316694 CABLES1Q8TDN4 633 aa26.02■■□□□ 1.76
SHMT1-201ENST00000316694 TSC1Q92574 1164 aa26.02■■□□□ 1.76
SHMT1-201ENST00000316694 GTF3C6Q969F1 213 aa26.02■■□□□ 1.76
SHMT1-201ENST00000316694 GOLGA6L6A8MZA4 724 aa26.01■■□□□ 1.75
SHMT1-201ENST00000316694 PHKG2P15735 406 aa26.01■■□□□ 1.75
SHMT1-201ENST00000316694 HMGN5P82970 282 aaKnown RBP26.01■■□□□ 1.75
SHMT1-201ENST00000316694 Q6ZUG5 572 aa26.01■■□□□ 1.75
SHMT1-201ENST00000316694 ADAMTS7Q9UKP4 1686 aa26.01■■□□□ 1.75
SHMT1-201ENST00000316694 ATP5J2-PTCD1G3V325 749 aa26■■□□□ 1.75
SHMT1-201ENST00000316694 PTCD1O75127 700 aaKnown RBP26■■□□□ 1.75
SHMT1-201ENST00000316694 RFX5P48382 616 aaPredicted RBP26■■□□□ 1.75
SHMT1-201ENST00000316694 ANO6Q4KMQ2 910 aa26■■□□□ 1.75
SHMT1-201ENST00000316694 MTERF4Q7Z6M4 381 aaKnown RBP26■■□□□ 1.75
SHMT1-201ENST00000316694 DBNDD2Q9BQY9 259 aa26■■□□□ 1.75
SHMT1-201ENST00000316694 KIAA1524Q8TCG1 905 aa26■■□□□ 1.75
SHMT1-201ENST00000316694 BICD2Q8TD16 824 aa26■■□□□ 1.75
SHMT1-201ENST00000316694 DDX11Q96FC9 970 aa26■■□□□ 1.75
SHMT1-201ENST00000316694 DDX46Q7L014 1031 aaKnown RBP25.99■■□□□ 1.75
SHMT1-201ENST00000316694 BRF1Q92994 677 aa25.99■■□□□ 1.75
SHMT1-201ENST00000316694 ZNF609O15014 1411 aa25.99■■□□□ 1.75
SHMT1-201ENST00000316694 TPM3P06753 285 aa25.99■■□□□ 1.75
SHMT1-201ENST00000316694 TATP17735 454 aaPredicted RBP25.99■■□□□ 1.75
SHMT1-201ENST00000316694 TTC5Q8N0Z6 440 aa25.99■■□□□ 1.75
SHMT1-201ENST00000316694 LRRC2Q9BYS8 371 aa25.99■■□□□ 1.75
SHMT1-201ENST00000316694 H3BQV1 296 aa25.98■■□□□ 1.75
SHMT1-201ENST00000316694 IFFO2Q5TF58 517 aa25.98■■□□□ 1.75
SHMT1-201ENST00000316694 DDX19AQ9NUU7 478 aaKnown RBP25.98■■□□□ 1.75
SHMT1-201ENST00000316694 NR1I2O75469 434 aa25.98■■□□□ 1.75
SHMT1-201ENST00000316694 CYP21A2P08686 494 aa25.98■■□□□ 1.75
SHMT1-201ENST00000316694 FGD1P98174 961 aa25.98■■□□□ 1.75
SHMT1-201ENST00000316694 U3KPZ7 1027 aaPredicted RBP25.98■■□□□ 1.75
SHMT1-201ENST00000316694 CSB-PGBD3P0DP91 1061 aa25.97■■□□□ 1.75
SHMT1-201ENST00000316694 CHRNA2Q15822 529 aa25.97■■□□□ 1.75
SHMT1-201ENST00000316694 CBX8Q9HC52 389 aa25.97■■□□□ 1.75
SHMT1-201ENST00000316694 A0A087WZG4 1122 aa25.97■■□□□ 1.75
SHMT1-201ENST00000316694 SNRPA1P09661 255 aaKnown RBP25.97■■□□□ 1.75
SHMT1-201ENST00000316694 MCMDC2Q4G0Z9 681 aa25.97■■□□□ 1.75
SHMT1-201ENST00000316694 PGBD1Q96JS3 809 aa25.97■■□□□ 1.75
SHMT1-201ENST00000316694 CLSTN2Q9H4D0 955 aa25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms