RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 SSFA2P28290 1259 aa6.44□□□□□ -1.38
CD44-202ENST00000278385 IDH3AP50213 366 aa6.44□□□□□ -1.38
CD44-202ENST00000278385 RNFT1Q5M7Z0 435 aa6.44□□□□□ -1.38
CD44-202ENST00000278385 NEDD1Q8NHV4 660 aa6.44□□□□□ -1.38
CD44-202ENST00000278385 CCER1Q8TC90 406 aaPredicted RBP6.44□□□□□ -1.38
CD44-202ENST00000278385 PIK3R5Q8WYR1 880 aa6.44□□□□□ -1.38
CD44-202ENST00000278385 OXCT2Q9BYC2 517 aaPredicted RBP6.44□□□□□ -1.38
CD44-202ENST00000278385 QTRT2Q9H974 415 aaKnown RBP6.44□□□□□ -1.38
CD44-202ENST00000278385 EFCC1Q9HA90 598 aa6.44□□□□□ -1.38
CD44-202ENST00000278385 STIM2Q9P246 746 aa6.44□□□□□ -1.38
CD44-202ENST00000278385 FNDC3AQ9Y2H6 1198 aaKnown RBP6.44□□□□□ -1.38
CD44-202ENST00000278385 SYNJ2O15056 1496 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 CARNS1A5YM72 827 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 TCF3P15923 654 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 ALAS2P22557 587 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 AMPD1P23109 780 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 ADH6P28332 368 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 GAS6Q14393 721 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 COX20Q5RI15 118 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 ALKBH2Q6NS38 261 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 ZNF280CQ8ND82 737 aa6.43□□□□□ -1.38
CD44-202ENST00000278385 AVENQ9NQS1 362 aaPredicted RBP6.43□□□□□ -1.38
CD44-202ENST00000278385 GNEQ9Y223 722 aaKnown RBP6.43□□□□□ -1.38
CD44-202ENST00000278385 ARHGEF11O15085 1522 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 ANKRD62A6NC57 917 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 RPLP1P05386 114 aaKnown RBP6.42□□□□□ -1.38
CD44-202ENST00000278385 ARAFP10398 606 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 ERCC3P19447 782 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 MARSP56192 900 aaKnown RBP6.42□□□□□ -1.38
CD44-202ENST00000278385 CTBSQ01459 385 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 TYRO3Q06418 890 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 SPEM2Q0P670 501 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 SF3B2Q13435 895 aaKnown RBP6.42□□□□□ -1.38
CD44-202ENST00000278385 LCE2AQ5TA79 106 aaPredicted RBP6.42□□□□□ -1.38
CD44-202ENST00000278385 TREML1Q86YW5 311 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 KLRG1Q96E93 195 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 NDFIP2Q9NV92 336 aa6.42□□□□□ -1.38
CD44-202ENST00000278385 PIK3R2O00459 728 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 EFSO43281 561 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 FAM13AO94988 1023 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 SLURP2P0DP57 97 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 BCRP11274 1271 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 SFSWAPQ12872 951 aaKnown RBP6.41□□□□□ -1.38
CD44-202ENST00000278385 CCINQ13939 588 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 UBAP2LQ14157 1087 aaKnown RBP6.41□□□□□ -1.38
CD44-202ENST00000278385 PCSK7Q16549 785 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 TMED8Q6PL24 325 aaPredicted RBP6.41□□□□□ -1.38
CD44-202ENST00000278385 PODNQ7Z5L7 613 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 CMTR1Q8N1G2 835 aaKnown RBP6.41□□□□□ -1.38
CD44-202ENST00000278385 HELQQ8TDG4 1101 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 GTF3C2Q8WUA4 911 aaPredicted RBP6.41□□□□□ -1.38
CD44-202ENST00000278385 C7orf43Q8WVR3 580 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 UBXN4Q92575 508 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 C11orf16Q9NQ32 467 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 STK17AQ9UEE5 414 aa6.41□□□□□ -1.38
CD44-202ENST00000278385 DNMT3AQ9Y6K1 912 aaPredicted RBP6.41□□□□□ -1.38
CD44-202ENST00000278385 TOP2BQ02880 1626 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 THBS1P07996 1170 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 ZNF16P17020 682 aaPredicted RBP6.4□□□□□ -1.38
CD44-202ENST00000278385 KCNQ4P56696 695 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 NOM1Q5C9Z4 860 aaKnown RBP6.4□□□□□ -1.38
CD44-202ENST00000278385 ZNF468Q5VIY5 522 aaPredicted RBP6.4□□□□□ -1.38
CD44-202ENST00000278385 NOL8Q76FK4 1167 aaKnown RBP6.4□□□□□ -1.38
CD44-202ENST00000278385 RGL4Q8IZJ4 473 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 GALNT6Q8NCL4 622 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 BHMTQ93088 406 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 HIRIP3Q9BW71 556 aaPredicted RBP6.4□□□□□ -1.38
CD44-202ENST00000278385 LRRC4BQ9NT99 713 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 SEPT3Q9UH03 358 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 LRFN2Q9ULH4 789 aa6.4□□□□□ -1.38
CD44-202ENST00000278385 FHAD1B1AJZ9 1412 aa6.4□□□□□ -1.39
CD44-202ENST00000278385 NEURL1BA8MQ27 555 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 KRT76Q01546 638 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 TBC1D8BQ0IIM8 1120 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 SYT9Q86SS6 491 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 SAP130Q9H0E3 1048 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 IGFLR1Q9H665 355 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 RRAGCQ9HB90 399 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 GGA1Q9UJY5 639 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 SYNJ1O43426 1573 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 RIMBP3CA6NJZ7 1639 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 RIMBP3BA6NNM3 1639 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 RIMBP3Q9UFD9 1639 aa6.39□□□□□ -1.39
CD44-202ENST00000278385 SIN3BO75182 1162 aa6.38□□□□□ -1.39
CD44-202ENST00000278385 CELA2BP08218 269 aaPredicted RBP6.38□□□□□ -1.39
CD44-202ENST00000278385 INPP5BP32019 993 aa6.38□□□□□ -1.39
CD44-202ENST00000278385 ZAP70P43403 619 aa6.38□□□□□ -1.39
CD44-202ENST00000278385 PCBP4P57723 403 aaKnown RBP6.38□□□□□ -1.39
CD44-202ENST00000278385 FKBP4Q02790 459 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-202ENST00000278385 DNAJC14Q6Y2X3 702 aaPredicted RBP6.38□□□□□ -1.39
CD44-202ENST00000278385 SLCO4C1Q6ZQN7 724 aa6.38□□□□□ -1.39
CD44-202ENST00000278385 GLYCTKQ8IVS8 523 aa6.38□□□□□ -1.39
CD44-202ENST00000278385 EDARADDQ8WWZ3 215 aa6.38□□□□□ -1.39
CD44-202ENST00000278385 PRDM16Q9HAZ2 1276 aa6.38□□□□□ -1.39
CD44-202ENST00000278385 RTCBQ9Y3I0 505 aaKnown RBP6.38□□□□□ -1.39
CD44-202ENST00000278385 BIVM-ERCC5R4GMW8 1640 aa6.37□□□□□ -1.39
CD44-202ENST00000278385 GRIN2AQ12879 1464 aa6.37□□□□□ -1.39
CD44-202ENST00000278385 PLEKHD1A6NEE1 506 aa6.37□□□□□ -1.39
CD44-202ENST00000278385 OIP5O43482 229 aa6.37□□□□□ -1.39
CD44-202ENST00000278385 MARCH6O60337 910 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms