RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 RRP7AQ9Y3A4 280 aaKnown RBP11.87□□□□□ -0.51
TPM3-201ENST00000271850 IBTKQ9P2D0 1353 aaPredicted RBP11.87□□□□□ -0.51
TPM3-201ENST00000271850 ITGBL1O95965 494 aaPredicted RBP11.86□□□□□ -0.51
TPM3-201ENST00000271850 ANXA1P04083 346 aa11.86□□□□□ -0.51
TPM3-201ENST00000271850 SYNE4Q8N205 404 aa11.86□□□□□ -0.51
TPM3-201ENST00000271850 PNISRQ8TF01 805 aaKnown RBP11.86□□□□□ -0.51
TPM3-201ENST00000271850 HOXA10P31260 410 aaPredicted RBP11.85□□□□□ -0.51
TPM3-201ENST00000271850 IARSP41252 1262 aaKnown RBP11.85□□□□□ -0.51
TPM3-201ENST00000271850 EMP3P54852 163 aa11.85□□□□□ -0.51
TPM3-201ENST00000271850 RNF123Q5XPI4 1314 aa11.85□□□□□ -0.51
TPM3-201ENST00000271850 COL4A1P02462 1669 aa11.84□□□□□ -0.51
TPM3-201ENST00000271850 GSE1Q14687 1217 aa11.84□□□□□ -0.51
TPM3-201ENST00000271850 KRT24Q2M2I5 525 aa11.84□□□□□ -0.51
TPM3-201ENST00000271850 GIGYF2Q6Y7W6 1299 aaKnown RBP11.84□□□□□ -0.51
TPM3-201ENST00000271850 LDHDQ86WU2 507 aa11.84□□□□□ -0.51
TPM3-201ENST00000271850 RTKN2Q8IZC4 609 aa11.84□□□□□ -0.51
TPM3-201ENST00000271850 PSMD1Q99460 953 aa11.84□□□□□ -0.51
TPM3-201ENST00000271850 MKRN1Q9UHC7 482 aaKnown RBP11.84□□□□□ -0.51
TPM3-201ENST00000271850 CNTNAP1P78357 1384 aa11.83□□□□□ -0.52
TPM3-201ENST00000271850 LAMB2P55268 1798 aa11.83□□□□□ -0.52
TPM3-201ENST00000271850 ALDH1B1P30837 517 aa11.83□□□□□ -0.52
TPM3-201ENST00000271850 TSPYL4Q9UJ04 414 aa11.83□□□□□ -0.52
TPM3-201ENST00000271850 ERBB4Q15303 1308 aa11.83□□□□□ -0.52
TPM3-201ENST00000271850 IQCA1LA6NCM1 817 aa11.82□□□□□ -0.52
TPM3-201ENST00000271850 EPHX2P34913 555 aa11.82□□□□□ -0.52
TPM3-201ENST00000271850 TMPOP42166 694 aaKnown RBP11.82□□□□□ -0.52
TPM3-201ENST00000271850 RIPK4P57078 832 aa11.82□□□□□ -0.52
TPM3-201ENST00000271850 FMR1Q06787 632 aaKnown RBP eCLIP11.82□□□□□ -0.52
TPM3-201ENST00000271850 KIF6Q6ZMV9 814 aa11.82□□□□□ -0.52
TPM3-201ENST00000271850 PDCD7Q8N8D1 485 aaKnown RBP11.82□□□□□ -0.52
TPM3-201ENST00000271850 NYXQ9GZU5 481 aa11.82□□□□□ -0.52
TPM3-201ENST00000271850 ANKRD36CQ5JPF3 1778 aa11.82□□□□□ -0.52
TPM3-201ENST00000271850 DUOX1Q9NRD9 1551 aa11.81□□□□□ -0.52
TPM3-201ENST00000271850 EIF2S2P20042 333 aaKnown RBP11.81□□□□□ -0.52
TPM3-201ENST00000271850 GTF2E1P29083 439 aaPredicted RBP11.81□□□□□ -0.52
TPM3-201ENST00000271850 SCNN1DP51172 638 aa11.81□□□□□ -0.52
TPM3-201ENST00000271850 MAP1SQ66K74 1059 aaPredicted RBP11.81□□□□□ -0.52
TPM3-201ENST00000271850 HACL1Q9UJ83 578 aa11.81□□□□□ -0.52
TPM3-201ENST00000271850 MAPK8IP3Q9UPT6 1336 aa11.81□□□□□ -0.52
TPM3-201ENST00000271850 PPEF1O14829 653 aaPredicted RBP11.8□□□□□ -0.52
TPM3-201ENST00000271850 EAPPQ56P03 285 aaPredicted RBP11.8□□□□□ -0.52
TPM3-201ENST00000271850 SLC10A5Q5PT55 438 aa11.8□□□□□ -0.52
TPM3-201ENST00000271850 CCDC146Q8IYE0 955 aa11.8□□□□□ -0.52
TPM3-201ENST00000271850 GPC2Q8N158 579 aa11.8□□□□□ -0.52
TPM3-201ENST00000271850 NECTIN2Q92692 538 aa11.8□□□□□ -0.52
TPM3-201ENST00000271850 CRAMP1Q96RY5 1269 aa11.8□□□□□ -0.52
TPM3-201ENST00000271850 TAF1P21675 1872 aa11.8□□□□□ -0.52
TPM3-201ENST00000271850 ABCC4O15439 1325 aa11.8□□□□□ -0.52
TPM3-201ENST00000271850 TCERG1O14776 1098 aaKnown RBP11.79□□□□□ -0.52
TPM3-201ENST00000271850 FOXN1O15353 648 aa11.79□□□□□ -0.52
TPM3-201ENST00000271850 EPS15P42566 896 aa11.79□□□□□ -0.52
TPM3-201ENST00000271850 VEGFBP49765 207 aa11.79□□□□□ -0.52
TPM3-201ENST00000271850 XAGE3Q8WTP9 111 aa11.79□□□□□ -0.52
TPM3-201ENST00000271850 RPGRQ92834 1020 aaKnown RBP11.79□□□□□ -0.52
TPM3-201ENST00000271850 ZNF428Q96B54 188 aa11.79□□□□□ -0.52
TPM3-201ENST00000271850 DDX60Q8IY21 1712 aaKnown RBP11.78□□□□□ -0.52
TPM3-201ENST00000271850 CHL1O00533 1208 aa11.78□□□□□ -0.52
TPM3-201ENST00000271850 NEFMP07197 916 aa11.78□□□□□ -0.52
TPM3-201ENST00000271850 HCLS1P14317 486 aaPredicted RBP11.78□□□□□ -0.52
TPM3-201ENST00000271850 RALBP1Q15311 655 aa11.78□□□□□ -0.52
TPM3-201ENST00000271850 AOC3Q16853 763 aa11.78□□□□□ -0.52
TPM3-201ENST00000271850 COPS6Q7L5N1 327 aa11.78□□□□□ -0.52
TPM3-201ENST00000271850 NLRP10Q86W26 655 aa11.78□□□□□ -0.52
TPM3-201ENST00000271850 TNS4Q8IZW8 715 aa11.78□□□□□ -0.52
TPM3-201ENST00000271850 RBM17Q96I25 401 aaKnown RBP11.78□□□□□ -0.52
TPM3-201ENST00000271850 BABAM1Q9NWV8 329 aa11.78□□□□□ -0.52
TPM3-201ENST00000271850 TMEM88BA6NKF7 163 aa11.77□□□□□ -0.53
TPM3-201ENST00000271850 PARP10Q53GL7 1025 aa11.77□□□□□ -0.53
TPM3-201ENST00000271850 CC2D2BQ6DHV5 1058 aa11.77□□□□□ -0.53
TPM3-201ENST00000271850 CNTROBQ8N137 903 aa11.77□□□□□ -0.53
TPM3-201ENST00000271850 UTP14AQ9BVJ6 771 aaKnown RBP11.77□□□□□ -0.53
TPM3-201ENST00000271850 RTFDC1Q9BY42 306 aaPredicted RBP11.77□□□□□ -0.53
TPM3-201ENST00000271850 ATP6V0A2Q9Y487 856 aa11.77□□□□□ -0.53
TPM3-201ENST00000271850 GJA3Q9Y6H8 435 aa11.77□□□□□ -0.53
TPM3-201ENST00000271850 THSD7BQ9C0I4 1608 aa11.77□□□□□ -0.53
TPM3-201ENST00000271850 MYBBP1AQ9BQG0 1328 aaKnown RBP11.77□□□□□ -0.53
TPM3-201ENST00000271850 LRRC37AA6NMS7 1700 aa11.77□□□□□ -0.53
TPM3-201ENST00000271850 RASSF10A6NK89 507 aa11.76□□□□□ -0.53
TPM3-201ENST00000271850 AIMP1Q12904 312 aaKnown RBP11.76□□□□□ -0.53
TPM3-201ENST00000271850 DDX10Q13206 875 aaKnown RBP11.76□□□□□ -0.53
TPM3-201ENST00000271850 NEUROD2Q15784 382 aa11.76□□□□□ -0.53
TPM3-201ENST00000271850 PPP1R42Q7Z4L9 355 aa11.76□□□□□ -0.53
TPM3-201ENST00000271850 LARGE2Q8N3Y3 721 aa11.76□□□□□ -0.53
TPM3-201ENST00000271850 PNNQ9H307 717 aaKnown RBP11.76□□□□□ -0.53
TPM3-201ENST00000271850 CHPF2Q9P2E5 772 aa11.76□□□□□ -0.53
TPM3-201ENST00000271850 SHTN1A0MZ66 631 aa11.75□□□□□ -0.53
TPM3-201ENST00000271850 PPIP5K2O43314 1243 aa11.75□□□□□ -0.53
TPM3-201ENST00000271850 TCIRG1Q13488 830 aa11.75□□□□□ -0.53
TPM3-201ENST00000271850 PNMA8AQ86V59 439 aaPredicted RBP11.75□□□□□ -0.53
TPM3-201ENST00000271850 JDP2Q8WYK2 163 aa11.75□□□□□ -0.53
TPM3-201ENST00000271850 NLRP3Q96P20 1036 aa11.75□□□□□ -0.53
TPM3-201ENST00000271850 DDX21Q9NR30 783 aaKnown RBP eCLIP11.75□□□□□ -0.53
TPM3-201ENST00000271850 ADAMTS8Q9UP79 889 aa11.75□□□□□ -0.53
TPM3-201ENST00000271850 YDJCA8MPS7 323 aa11.74□□□□□ -0.53
TPM3-201ENST00000271850 TRAF5O00463 557 aa11.74□□□□□ -0.53
TPM3-201ENST00000271850 CHRM1P11229 460 aaPredicted RBP11.74□□□□□ -0.53
TPM3-201ENST00000271850 PSEN1P49768 467 aa11.74□□□□□ -0.53
TPM3-201ENST00000271850 EIF6P56537 245 aaKnown RBP11.74□□□□□ -0.53
TPM3-201ENST00000271850 CXCL9Q07325 125 aa11.74□□□□□ -0.53
TPM3-201ENST00000271850 CST9Q5W186 159 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms