RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SNRKQ9NRH2 765 aa25.36■■□□□ 1.65
TRIM28-201ENST00000253024 ATP6V1DQ9Y5K8 247 aa25.36■■□□□ 1.65
TRIM28-201ENST00000253024 PHKG2P15735 406 aa25.35■■□□□ 1.65
TRIM28-201ENST00000253024 CYP27B1O15528 508 aa25.35■■□□□ 1.65
TRIM28-201ENST00000253024 ERCC4Q92889 916 aaPredicted RBP25.35■■□□□ 1.65
TRIM28-201ENST00000253024 BRF1Q92994 677 aa25.35■■□□□ 1.65
TRIM28-201ENST00000253024 DACT1Q9NYF0 836 aa25.35■■□□□ 1.65
TRIM28-201ENST00000253024 COL15A1P39059 1388 aa25.35■■□□□ 1.65
TRIM28-201ENST00000253024 PTPN12Q05209 780 aaKnown RBP25.35■■□□□ 1.65
TRIM28-201ENST00000253024 USP42Q9H9J4 1324 aaKnown RBP25.34■■□□□ 1.65
TRIM28-201ENST00000253024 TNNI3KQ59H18 835 aa25.34■■□□□ 1.65
TRIM28-201ENST00000253024 TTLL7Q6ZT98 887 aa25.34■■□□□ 1.65
TRIM28-201ENST00000253024 METTL22Q9BUU2 404 aaPredicted RBP25.34■■□□□ 1.65
TRIM28-201ENST00000253024 FPGT-TNNI3KV9GXZ4 949 aa25.34■■□□□ 1.65
TRIM28-201ENST00000253024 ZNF500O60304 480 aaPredicted RBP25.34■■□□□ 1.65
TRIM28-201ENST00000253024 TPM2P07951 284 aa25.34■■□□□ 1.65
TRIM28-201ENST00000253024 KIAA2012Q0VF49 1180 aa25.34■■□□□ 1.65
TRIM28-201ENST00000253024 Q6ZUG5 572 aa25.34■■□□□ 1.65
TRIM28-201ENST00000253024 RPS6KB1P23443 525 aa25.33■■□□□ 1.65
TRIM28-201ENST00000253024 CABP4P57796 275 aa25.33■■□□□ 1.65
TRIM28-201ENST00000253024 BICD2Q8TD16 824 aa25.33■■□□□ 1.65
TRIM28-201ENST00000253024 NCOA5Q9HCD5 579 aaKnown RBP25.33■■□□□ 1.65
TRIM28-201ENST00000253024 TAF5LO75529 589 aa25.33■■□□□ 1.65
TRIM28-201ENST00000253024 A1BGP04217 495 aa25.33■■□□□ 1.65
TRIM28-201ENST00000253024 CACNA1FO60840 1977 aa25.33■■□□□ 1.64
TRIM28-201ENST00000253024 RNF20Q5VTR2 975 aa25.32■■□□□ 1.64
TRIM28-201ENST00000253024 SH2B1Q9NRF2 756 aaPredicted RBP25.32■■□□□ 1.64
TRIM28-201ENST00000253024 KRT85P78386 507 aa25.32■■□□□ 1.64
TRIM28-201ENST00000253024 SPATA32Q96LK8 384 aa25.32■■□□□ 1.64
TRIM28-201ENST00000253024 PSMA5P28066 241 aa25.32■■□□□ 1.64
TRIM28-201ENST00000253024 ZSCAN31Q96LW9 406 aaPredicted RBP25.32■■□□□ 1.64
TRIM28-201ENST00000253024 CHMP4AQ9BY43 222 aa25.32■■□□□ 1.64
TRIM28-201ENST00000253024 H3BQV1 296 aa25.31■■□□□ 1.64
TRIM28-201ENST00000253024 IFFO2Q5TF58 517 aa25.31■■□□□ 1.64
TRIM28-201ENST00000253024 CYP21A2P08686 494 aa25.3■■□□□ 1.64
TRIM28-201ENST00000253024 HS1BP3Q53T59 392 aa25.3■■□□□ 1.64
TRIM28-201ENST00000253024 ADGRL3Q9HAR2 1447 aa25.3■■□□□ 1.64
TRIM28-201ENST00000253024 RRP9O43818 475 aaKnown RBP25.3■■□□□ 1.64
TRIM28-201ENST00000253024 HAND2P61296 217 aa25.29■■□□□ 1.64
TRIM28-201ENST00000253024 LRRC24Q50LG9 513 aa25.29■■□□□ 1.64
TRIM28-201ENST00000253024 DRC7Q8IY82 874 aa25.29■■□□□ 1.64
TRIM28-201ENST00000253024 IL17RAQ96F46 866 aa25.29■■□□□ 1.64
TRIM28-201ENST00000253024 SNRPA1P09661 255 aaKnown RBP25.29■■□□□ 1.64
TRIM28-201ENST00000253024 APOBRQ0VD83 1088 aa25.29■■□□□ 1.64
TRIM28-201ENST00000253024 IFNL2Q8IZJ0 200 aa25.29■■□□□ 1.64
TRIM28-201ENST00000253024 NEK1Q96PY6 1258 aa25.29■■□□□ 1.64
TRIM28-201ENST00000253024 GPHNQ9NQX3 736 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-201ENST00000253024 KDM6AO15550 1401 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-201ENST00000253024 FKBP4Q02790 459 aaKnown RBP eCLIP25.28■■□□□ 1.64
TRIM28-201ENST00000253024 TTLL5Q6EMB2 1281 aa25.28■■□□□ 1.64
TRIM28-201ENST00000253024 TMEM87AQ8NBN3 555 aa25.28■■□□□ 1.64
TRIM28-201ENST00000253024 NUP62CLQ9H1M0 184 aa25.28■■□□□ 1.64
TRIM28-201ENST00000253024 NR1I2O75469 434 aa25.28■■□□□ 1.64
TRIM28-201ENST00000253024 PUS3Q9BZE2 481 aaKnown RBP25.28■■□□□ 1.64
TRIM28-201ENST00000253024 TM6SF1Q9BZW5 370 aa25.27■■□□□ 1.64
TRIM28-201ENST00000253024 TNMDQ9H2S6 317 aa25.27■■□□□ 1.64
TRIM28-201ENST00000253024 PYCARDQ9ULZ3 195 aa25.27■■□□□ 1.64
TRIM28-201ENST00000253024 ATF3P18847 181 aa25.27■■□□□ 1.64
TRIM28-201ENST00000253024 STOX1Q6ZVD7 989 aa25.27■■□□□ 1.64
TRIM28-201ENST00000253024 FAM184AQ8NB25 1140 aa25.26■■□□□ 1.63
TRIM28-201ENST00000253024 HDAC5Q9UQL6 1122 aa25.26■■□□□ 1.63
TRIM28-201ENST00000253024 ANO6Q4KMQ2 910 aa25.26■■□□□ 1.63
TRIM28-201ENST00000253024 NOLC1Q14978 699 aaKnown RBP eCLIP25.26■■□□□ 1.635e-7■■□□□ 14.3
TRIM28-201ENST00000253024 OTUD7BQ6GQQ9 843 aa25.26■■□□□ 1.63
TRIM28-201ENST00000253024 NPHP4O75161 1426 aaPredicted RBP25.25■■□□□ 1.63
TRIM28-201ENST00000253024 HIP1O00291 1037 aa25.25■■□□□ 1.63
TRIM28-201ENST00000253024 NRBP1Q9UHY1 535 aa25.25■■□□□ 1.63
TRIM28-201ENST00000253024 RFX5P48382 616 aaPredicted RBP25.25■■□□□ 1.63
TRIM28-201ENST00000253024 FMNL2Q96PY5 1086 aa25.25■■□□□ 1.63
TRIM28-201ENST00000253024 STRN4Q9NRL3 753 aa25.25■■□□□ 1.63
TRIM28-201ENST00000253024 MEGF6O75095 1541 aa25.25■■□□□ 1.63
TRIM28-201ENST00000253024 HEG1Q9ULI3 1381 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 ZNF609O15014 1411 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 NBPF26B4DH59 902 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 CCDC192P0DO97 292 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 TYRO3Q06418 890 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 MAP3K11Q16584 847 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 NBPF14Q5TI25 921 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 NBPF10Q6P3W6 841 aaKnown RBP25.24■■□□□ 1.63
TRIM28-201ENST00000253024 NBPF15Q8N660 670 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 DNAJC25Q9H1X3 360 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 KDM3BQ7LBC6 1761 aa25.24■■□□□ 1.63
TRIM28-201ENST00000253024 A0A0G2JS52 829 aa25.23■■□□□ 1.63
TRIM28-201ENST00000253024 PTGS1P23219 599 aa25.23■■□□□ 1.63
TRIM28-201ENST00000253024 LRMPQ12912 555 aa25.23■■□□□ 1.63
TRIM28-201ENST00000253024 MED1Q15648 1581 aaPredicted RBP25.23■■□□□ 1.63
TRIM28-201ENST00000253024 EPB41L2O43491 1005 aaKnown RBP25.23■■□□□ 1.63
TRIM28-201ENST00000253024 SCRN1Q12765 414 aa25.23■■□□□ 1.63
TRIM28-201ENST00000253024 LEO1Q8WVC0 666 aaPredicted RBP25.23■■□□□ 1.63
TRIM28-201ENST00000253024 KAT6BQ8WYB5 2073 aa25.23■■□□□ 1.63
TRIM28-201ENST00000253024 PI16Q6UXB8 463 aa25.23■■□□□ 1.63
TRIM28-201ENST00000253024 PGBD1Q96JS3 809 aa25.23■■□□□ 1.63
TRIM28-201ENST00000253024 FUCA2Q9BTY2 467 aa25.23■■□□□ 1.63
TRIM28-201ENST00000253024 GJB4Q9NTQ9 266 aa25.22■■□□□ 1.63
TRIM28-201ENST00000253024 RGPD5Q99666 1765 aa25.22■■□□□ 1.63
TRIM28-201ENST00000253024 SYNE4Q8N205 404 aa25.22■■□□□ 1.63
TRIM28-201ENST00000253024 MRVI1Q9Y6F6 885 aa25.21■■□□□ 1.63
TRIM28-201ENST00000253024 MED23Q9ULK4 1368 aa25.21■■□□□ 1.63
TRIM28-201ENST00000253024 CSPP1Q1MSJ5 1256 aa25.21■■□□□ 1.63
TRIM28-201ENST00000253024 TOM1L2Q6ZVM7 507 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms