RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 TAF7Q15545 349 aaPredicted RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 ZNF569Q5MCW4 686 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 ARFGAP2Q8N6H7 521 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 NEK11Q8NG66 645 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 CAPZA3Q96KX2 299 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 N4BP3O15049 544 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 IDH1O75874 414 aaKnown RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 IFIT1P09914 478 aaKnown RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 AP1ARQ63HQ0 302 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 CCDC50Q8IVM0 306 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 PAF1Q8N7H5 531 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 LACTBP83111 547 aaPredicted RBP11.92□□□□□ -0.5
VCL-201ENST00000211998 PRPF4BQ13523 1007 aaKnown RBP11.92□□□□□ -0.5
VCL-201ENST00000211998 HDAC1Q13547 482 aaPredicted RBP11.92□□□□□ -0.5
VCL-201ENST00000211998 RABEP2Q9H5N1 569 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 ADGRL1O94910 1474 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 CCDC102BQ68D86 513 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 ZSCAN16Q9H4T2 348 aaPredicted RBP11.92□□□□□ -0.5
VCL-201ENST00000211998 PCK1P35558 622 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 MTIF2P46199 727 aaKnown RBP11.92□□□□□ -0.5
VCL-201ENST00000211998 CAVIN4Q5BKX8 364 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 SELENOSQ9BQE4 189 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.92□□□□□ -0.51e-7■□□□□ 11.2
VCL-201ENST00000211998 NSD2O96028 1365 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 LMOD1P29536 600 aaPredicted RBP11.92□□□□□ -0.5
VCL-201ENST00000211998 LMNTD2Q8IXW0 634 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 CTNNBL1Q8WYA6 563 aaPredicted RBP11.92□□□□□ -0.5
VCL-201ENST00000211998 UTP14AQ9BVJ6 771 aaKnown RBP11.92□□□□□ -0.5
VCL-201ENST00000211998 CARD6Q9BX69 1037 aa11.92□□□□□ -0.5
VCL-201ENST00000211998 POLR3DP05423 398 aaPredicted RBP11.91□□□□□ -0.5
VCL-201ENST00000211998 DESP17661 470 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 NECAB1Q8N987 351 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 ZNF76P36508 570 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 FAM160A1Q05DH4 1040 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 IFNKQ9P0W0 207 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 SWAP70Q9UH65 585 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 FEZ2Q9UHY8 353 aaPredicted RBP11.91□□□□□ -0.5
VCL-201ENST00000211998 PTPN23Q9H3S7 1636 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 FSD2A1L4K1 749 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 NOP2P46087 812 aaKnown RBP11.91□□□□□ -0.5
VCL-201ENST00000211998 CCDC96Q2M329 555 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 PPP1R9BQ96SB3 815 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 HMGB1P09429 215 aaKnown RBP11.91□□□□□ -0.5
VCL-201ENST00000211998 CETN2P41208 172 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.91□□□□□ -0.5
VCL-201ENST00000211998 MIPOL1Q8TD10 442 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 LAMC3Q9Y6N6 1575 aa11.91□□□□□ -0.5
VCL-201ENST00000211998 MYO1BO43795 1136 aa11.9□□□□□ -0.5
VCL-201ENST00000211998 CCDC196A0A1B0GTZ2 297 aa11.9□□□□□ -0.5
VCL-201ENST00000211998 ARHGAP25P42331 645 aa11.9□□□□□ -0.5
VCL-201ENST00000211998 SAMD15Q9P1V8 674 aa11.9□□□□□ -0.5
VCL-201ENST00000211998 PCF11O94913 1555 aaKnown RBP11.9□□□□□ -0.5
VCL-201ENST00000211998 ZFYP08048 801 aaPredicted RBP11.9□□□□□ -0.5
VCL-201ENST00000211998 SDSP20132 328 aa11.9□□□□□ -0.5
VCL-201ENST00000211998 CYLC1P35663 651 aaPredicted RBP11.9□□□□□ -0.5
VCL-201ENST00000211998 TSG101Q99816 390 aa11.9□□□□□ -0.5
VCL-201ENST00000211998 A0A1W2PRG0 241 aa11.9□□□□□ -0.5
VCL-201ENST00000211998 ZPR1O75312 459 aa11.9□□□□□ -0.5
VCL-201ENST00000211998 AKR1B10O60218 316 aa11.9□□□□□ -0.51
VCL-201ENST00000211998 SYKP43405 635 aa11.9□□□□□ -0.51
VCL-201ENST00000211998 GOLGA6CA6NDK9 693 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 GOLGA6DP0CG33 693 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 GOLGA6AQ9NYA3 693 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 NCOA1Q15788 1441 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 MXRA7P84157 204 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 CFAP58Q5T655 872 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 BICDL1Q6ZP65 573 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 PPP1R12CQ9BZL4 782 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 BOLA2Q9H3K6 86 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 PHAXQ9H814 394 aaKnown RBP11.89□□□□□ -0.51
VCL-201ENST00000211998 SEC63Q9UGP8 760 aaKnown RBP11.89□□□□□ -0.51
VCL-201ENST00000211998 PHF8Q9UPP1 1060 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 TTC21BQ7Z4L5 1316 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 MAP3K1Q13233 1512 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 FGFR1OPO95684 399 aaKnown RBP11.89□□□□□ -0.51
VCL-201ENST00000211998 ATP11AP98196 1134 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 TNIP1Q15025 636 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 MCM10Q7L590 875 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 MRPS27Q92552 414 aaKnown RBP11.89□□□□□ -0.51
VCL-201ENST00000211998 ZNF622Q969S3 477 aaKnown RBP eCLIP11.89□□□□□ -0.51
VCL-201ENST00000211998 PPFIBP2Q8ND30 876 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 IFT81Q8WYA0 676 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 CTAGE1Q96RT6 745 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 NAP1L3Q99457 506 aaPredicted RBP11.89□□□□□ -0.51
VCL-201ENST00000211998 ABCF2Q9UG63 623 aa11.89□□□□□ -0.51
VCL-201ENST00000211998 TSHZ3Q63HK5 1081 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 FAM114A1Q8IWE2 563 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 GUCA1BQ9UMX6 200 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 TACC1O75410 805 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 VAV2P52735 878 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 KIAA0753Q2KHM9 967 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 HOOK3Q86VS8 718 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 THUMPD2Q9BTF0 503 aaKnown RBP11.88□□□□□ -0.51
VCL-201ENST00000211998 PPP1R12BO60237 982 aaPredicted RBP11.88□□□□□ -0.51
VCL-201ENST00000211998 PPFIA3O75145 1194 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 CCDC172P0C7W6 258 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 USP5P45974 858 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 MAP3K12Q12852 859 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 MYD88Q99836 296 aa11.88□□□□□ -0.51
VCL-201ENST00000211998 PTPRCP08575 1304 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms