RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TAGLN3Q9UI15 199 aa20.3■□□□□ 0.84
SFSWAP-204ENST00000535399 PACSIN3Q9UKS6 424 aa20.3■□□□□ 0.84
SFSWAP-204ENST00000535399 IGHV3-15A0A0B4J1V0 119 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 A0A1B0GWA3 101 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 ELOVL7A1L3X0 281 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 M0R3H8 397 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 SULT2B1O00204 365 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 SMAD9O15198 467 aaKnown RBP20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 CXCR1P25024 350 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 CSNK2A1P68400 391 aaPredicted RBP20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 BNIP2Q12982 314 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 C6orf89Q6UWU4 347 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 FCRLAQ7L513 359 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 FAM214BQ7L5A3 538 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 CCDC197Q8NCU1 140 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 OR52E4Q8NGH9 312 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 RNASE6Q93091 150 aaKnown RBP20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 ZNF559Q9BR84 538 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 POTEKPQ9BYX7 375 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 TRIM2Q9C040 744 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 GLRX2Q9NS18 164 aa20.29■□□□□ 0.84
SFSWAP-204ENST00000535399 TMEM229AB2RXF0 380 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 CGAP01215 116 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 FESP07332 822 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 IMPDH2P12268 514 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 GSK3BP49841 420 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 NPTX1Q15818 432 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 GTF2IRD2BQ6EKJ0 949 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 GTF2IRD2Q86UP8 949 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 SLC43A2Q8N370 569 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 FITM2Q8N6M3 262 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 OR4D11Q8NGI4 311 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 SLC26A7Q8TE54 656 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 TMEM181Q9P2C4 612 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 RPS6KB2Q9UBS0 482 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 TRAPPC4Q9Y296 219 aa20.28■□□□□ 0.84
SFSWAP-204ENST00000535399 A8MXE2 369 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 NDUFAB1O14561 156 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 MSTNO14793 375 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 HNRNPRO43390 633 aaKnown RBP20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 DNPH1O43598 174 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 NPIPB7O75200 414 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 PLGP00747 810 aaPredicted RBP20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 COX6B1P14854 86 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 KDELR2P33947 212 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 NCALDP61601 193 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 KRT72Q14CN4 511 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 RNPS1Q15287 305 aaKnown RBP20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 OR1Q1Q15612 314 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 MEX3BQ6ZN04 569 aaKnown RBP20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 LUZP2Q86TE4 346 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 MCEMP1Q8IX19 187 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 DMRTC2Q8IXT2 367 aaPredicted RBP20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 OR6T1Q8NGN1 323 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 RASSF5Q8WWW0 418 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 ALG2Q9H553 416 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 C12orf10Q9HB07 376 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 ING1Q9UK53 422 aaPredicted RBP20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 EMC9Q9Y3B6 208 aa20.27■□□□□ 0.84
SFSWAP-204ENST00000535399 PKDREJQ9NTG1 2253 aa20.27■□□□□ 0.83
SFSWAP-204ENST00000535399 A8MVM7 634 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 CYTIPO60759 359 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 FMO6PO60774 539 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 SMNDC1O75940 238 aaKnown RBP eCLIP20.26■□□□□ 0.831e-14■■■■□ 22.7
SFSWAP-204ENST00000535399 PRKD3O94806 890 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 AGTR1P30556 359 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 UQCRC1P31930 480 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 CTBP2P56545 445 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 OR2B6P58173 313 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 ABLIM2Q6H8Q1 611 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 RANBP3LQ86VV4 465 aaPredicted RBP20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 RBM45Q8IUH3 476 aaKnown RBP20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 OR6K3Q8NGY3 331 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 STK35Q8TDR2 534 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 DNAJA4Q8WW22 397 aaPredicted RBP20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 MCHR1Q99705 422 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 RBM24Q9BX46 236 aaKnown RBP20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 OPN3Q9H1Y3 402 aaPredicted RBP20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 TMEM27Q9HBJ8 222 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 GP6Q9HCN6 339 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 SPAG4Q9NPE6 437 aa20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 FOXD3Q9UJU5 478 aaPredicted RBP20.26■□□□□ 0.83
SFSWAP-204ENST00000535399 A0A0B4J2E0 115 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 A0A1B0GX12 115 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 IFNA14P01570 189 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 CD8BP10966 210 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 H3F3AP84243 136 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 LRRC23Q53EV4 343 aaPredicted RBP20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 CYBRD1Q53TN4 286 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 ULK3Q6PHR2 472 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 ZNF474Q6S9Z5 364 aaPredicted RBP20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 TUSC5Q8IXB3 177 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 VANGL1Q8TAA9 524 aaPredicted RBP20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 MARVELD3Q96A59 401 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 LRRC46Q96FV0 321 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 PSD2Q9BQI7 771 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 PLSCR4Q9NRQ2 329 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 KLHL9Q9P2J3 617 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 KLHL13Q9P2N7 655 aa20.25■□□□□ 0.83
SFSWAP-204ENST00000535399 BAG5Q9UL15 447 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms