RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 AKT2P31751 481 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 TAF10Q12962 218 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CYP27C1Q4G0S4 372 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 TCTE1Q5JU00 501 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 MANEAQ5SRI9 462 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SLC6A16Q9GZN6 736 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 CPNE7Q9UBL6 633 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 PCDHGC4Q9Y5F7 938 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 BPTFQ12830 3046 aa4.95□□□□□ -1.62
SYNE1-220ENST00000471834 SEPT4O43236 478 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 DIRAS1O95057 198 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 CSN2P05814 226 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SBK2P0C263 348 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF735P0CB33 412 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 FSTP19883 344 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SLC6A11P48066 632 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PSMD4P55036 377 aaKnown RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 FOXK1P85037 733 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PRKCZQ05513 592 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ADAM15Q13444 863 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RNF212Q495C1 297 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 C1orf100Q5SVJ3 147 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 IDNKQ5T6J7 187 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PODNL1Q6PEZ8 512 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NKAIN4Q8IVV8 208 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ACBD7Q8N6N7 88 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NAXEQ8NCW5 288 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SMPDL3AQ92484 453 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RFT1Q96AA3 541 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 GPER1Q99527 375 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 GAL3ST1Q99999 423 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 IL21RQ9HBE5 538 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 CHMP1AQ9HD42 196 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 GPR160Q9UJ42 338 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 A0A1B0GW64 132 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 OR1F1O43749 312 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 GJB3O75712 270 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RAB40ALP0C0E4 278 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SMIM10L1P0DMW3 83 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 IL12BP29460 328 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 LGALS3BPQ08380 585 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SCGB2A2Q13296 93 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 DPPA4Q7L190 304 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 CXXC5Q7LFL8 322 aaKnown RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NLRC3Q7RTR2 1065 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 C1QL4Q86Z23 238 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RASGEF1AQ8N9B8 481 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 OR2T35Q8NGX2 323 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 LRRC20Q8TCA0 184 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 C16orf78Q8WTQ4 265 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 LCN9Q8WX39 176 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RAB40AQ8WXH6 277 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SMIM10Q96HG1 83 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NPAS1Q99742 590 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SSX3Q99909 188 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 OR52A5Q9H2C5 316 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 TTYH1Q9H313 450 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 DEC1Q9P2X7 70 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 TNFSF18Q9UNG2 199 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PLXNA4Q9HCM2 1894 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PCP4L1A6NKN8 68 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 OR7A10O76100 309 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 CATP04040 527 aaKnown RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 GLAP06280 429 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 IGLV3-21P80748 117 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 EIF3IQ13347 325 aaKnown RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF169Q14929 603 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ABLIM2Q6H8Q1 611 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 LILRA6Q6PI73 481 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PGAP1Q75T13 922 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 AQP11Q8NBQ7 271 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SSC4DQ8WTU2 575 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RFKQ969G6 155 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SMIM19Q96E16 107 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 COX14Q96I36 57 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 MS4A4EQ96PG1 132 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 DPAGT1Q9H3H5 408 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PADI3Q9ULW8 664 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 IRAK3Q9Y616 596 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 A0A0A6YYD5 115 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 SULT1C2O00338 296 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 NFYAP23511 347 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 STOMP27105 288 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 S100A11P31949 105 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 GPR4P46093 362 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 UBE2MP61081 183 aaKnown RBP4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ACTC1P68032 377 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 ACTA1P68133 377 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PMS2P11Q13670 270 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 IRF4Q15306 451 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 PCK2Q16822 640 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 FHL5Q5TD97 284 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 C17orf99Q6UX52 265 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 USP30Q70CQ3 517 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RTL10Q7L3V2 364 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 TMIEQ8NEW7 156 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 RPLP0P6Q8NHW5 317 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 GPX8Q8TED1 209 aa4.94□□□□□ -1.62
SYNE1-220ENST00000471834 THRSPQ92748 146 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms