RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 STARP49675 285 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 LHX2P50458 406 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 POLR2HP52434 150 aaKnown RBP26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 IGFBP7Q16270 282 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 UTP4Q969X6 686 aaKnown RBP26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 ACAD8Q9UKU7 415 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 POLEQ07864 2286 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 TCRBV5S2A0A599 114 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 RBPJQ06330 500 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 SELENBP1Q13228 472 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 OR1Q1Q15612 314 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 C3AR1Q16581 482 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 ENTPD8Q5MY95 495 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 C3orf33Q6P1S2 294 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 TSPYL5Q86VY4 417 aaPredicted RBP26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 PYURFQ96I23 114 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 TIMP4Q99727 224 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 TMEM27Q9HBJ8 222 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 OSGIN1Q9UJX0 560 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 PRDM4Q9UKN5 801 aa26.72■■□□□ 1.87
LIMCH1-211ENST00000509638 EFNA2O43921 213 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 SLC19A2O60779 497 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 APOBEC1P41238 236 aaKnown RBP26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 MRPL49Q13405 166 aaKnown RBP26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 PHF10Q8WUB8 498 aaKnown RBP26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 ADAM19Q9H013 955 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 CHRNA9Q9UGM1 479 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 BCKDKO14874 412 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 SEMA7AO75326 666 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 UBQLNLQ8IYU4 475 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 GALNT11Q8NCW6 608 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 ATP6V1C2Q8NEY4 427 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 OR5M9Q8NGP3 310 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 ADAMTS16Q8TE57 1224 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 AMBRA1Q9C0C7 1298 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 AP4B1Q9Y6B7 739 aa26.71■■□□□ 1.87
LIMCH1-211ENST00000509638 TMED7-TICAM2A0A0A6YYA0 188 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 A0A0B4J2E0 115 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 A0A1B0GX12 115 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 SEC14L5O43304 696 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 TPOP07202 933 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 ZNF708P17019 499 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 SFTPDP35247 375 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 CLDN18P56856 261 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 RAC1P63000 192 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 ZNF800Q2TB10 664 aaPredicted RBP eCLIP26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 ALG10BQ5I7T1 473 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 ATG4DQ86TL0 474 aaPredicted RBP26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 CD163Q86VB7 1156 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 LILRA2Q8N149 483 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 DNAJA4Q8WW22 397 aaPredicted RBP26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 RELTQ969Z4 430 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 CAMK2AQ9UQM7 478 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 TMED7Q9Y3B3 224 aa26.7■■□□□ 1.86
LIMCH1-211ENST00000509638 OPN1LWP04000 364 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 SEMG1P04279 462 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 CCNA2P20248 432 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 SHC1P29353 583 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 CLDN20P56880 219 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 WLSQ5T9L3 541 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 C1orf146Q5VVC0 180 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 ZNF613Q6PF04 617 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 ULK3Q6PHR2 472 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 GGNQ86UU5 652 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 ADGRG3Q86Y34 549 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 FAM57AQ8TBR7 257 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 SLC47A1Q96FL8 570 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 PRDM14Q9GZV8 571 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 SERINC1Q9NRX5 453 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 PNPLA3Q9NST1 481 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 SELENONQ9NZV5 590 aa26.69■■□□□ 1.86
LIMCH1-211ENST00000509638 H0YC42 278 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 TPD52P55327 224 aaPredicted RBP26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 TAS2R41P59536 307 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 SRYQ05066 204 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 ATCAYQ86WG3 371 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 RNF217Q8TC41 542 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 WDYHV1Q96HA8 205 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 PRRC1Q96M27 445 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 SEPHS2Q99611 448 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 STOML1Q9UBI4 398 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 ZNF835Q9Y2P0 537 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 SPIN1Q9Y657 262 aaPredicted RBP26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 ESPL1Q14674 2120 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 MYO18BQ8IUG5 2567 aa26.68■■□□□ 1.86
LIMCH1-211ENST00000509638 TRAPPC13A5PLN9 417 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 AQP12BA6NM10 295 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 hCG_2039718K7EN88 272 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 CIB2O75838 187 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 CXCR1P25024 350 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 YAP1P46937 504 aaKnown RBP26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 ERFP50548 548 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 CDH12P55289 794 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 VLDLRP98155 873 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 SPATA24Q86W54 205 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 AQP12AQ8IXF9 295 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 SLC25A43Q8WUT9 341 aaPredicted RBP26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 TMEM72A0PK05 275 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 ELOA3DA6NLF2 546 aaPredicted RBP26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 CPN1P15169 458 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms