RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 S100A6P06703 90 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 CT62P0C5K7 136 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 RAB28P51157 221 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 SNTB2Q13425 540 aaKnown RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 RUNX2Q13950 521 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 USF2Q15853 346 aaPredicted RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 Q6ZTK2 550 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 FCRLAQ7L513 359 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 BPHLQ86WA6 291 aaPredicted RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 MRPL43Q8N983 215 aaKnown RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 OR2L3Q8NG85 312 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 ZFAND1Q8TCF1 268 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 DIO2Q92813 273 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 FGF13Q92913 245 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 CXorf40BQ96DE9 158 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 BPIFA2Q96DR5 249 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 OR51J1Q9H342 316 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 SRMSQ9H3Y6 488 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 FANCFQ9NPI8 374 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 TAS2R7Q9NYW3 318 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 ZNF443Q9Y2A4 671 aaPredicted RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 MUC3AQ02505 3323 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 FXYD6-FXYD2A0A087WZ82 144 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 TCRBV16S1A1N1A0A5B0 115 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 METTL21EPA6NDL7 271 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 RGS13O14921 159 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 EMC8O43402 210 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 CHP2O43745 196 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 CTSVO60911 334 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 RGS9O75916 674 aaPredicted RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 ADH1CP00326 375 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 DHFRP00374 187 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 OPN1LWP04000 364 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 TCRBP04435 133 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 ACADMP11310 421 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 IL9P15248 144 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 ITGB7P26010 798 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 ERP29P30040 261 aaKnown RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 PEBP1P30086 187 aaKnown RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 PITPNBP48739 271 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 EMDP50402 254 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 PPP2CBP62714 309 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 PPP2CAP67775 309 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 TPBGQ13641 420 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 PDGFRLQ15198 375 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 B3GNTL1Q67FW5 361 aaPredicted RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 ZNF620Q6ZNG0 422 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 CHCHD4Q8N4Q1 142 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 BADQ92934 168 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 BTBD1Q9H0C5 482 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 FXYD6Q9H0Q3 95 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 TMEM138Q9NPI0 162 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 KLHL42Q9P2K6 505 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 PLCL2Q9UPR0 1127 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 ASB4Q9Y574 426 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 A3GALT2U3KPV4 340 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 LRRK1Q38SD2 2015 aa8□□□□□ -1.13
USP40-203ENST00000427112 ABCA7Q8IZY2 2146 aa8□□□□□ -1.13
USP40-203ENST00000427112 A0A0A6YYD5 115 aa8□□□□□ -1.13
USP40-203ENST00000427112 C11orf98E9PRG8 122 aa8□□□□□ -1.13
USP40-203ENST00000427112 FGF17O60258 216 aa8□□□□□ -1.13
USP40-203ENST00000427112 OR10H2O60403 315 aa8□□□□□ -1.13
USP40-203ENST00000427112 HLA-DQA2P01906 255 aa8□□□□□ -1.13
USP40-203ENST00000427112 CISD3P0C7P0 127 aa8□□□□□ -1.13
USP40-203ENST00000427112 OR8G3PP0DMU2 310 aa8□□□□□ -1.13
USP40-203ENST00000427112 IL32P24001 234 aa8□□□□□ -1.13
USP40-203ENST00000427112 STOMP27105 288 aa8□□□□□ -1.13
USP40-203ENST00000427112 RAD52P43351 418 aa8□□□□□ -1.13
USP40-203ENST00000427112 FXYD6P3P58550 94 aa8□□□□□ -1.13
USP40-203ENST00000427112 FOXK2Q01167 660 aa8□□□□□ -1.13
USP40-203ENST00000427112 FAM53BQ14153 422 aa8□□□□□ -1.13
USP40-203ENST00000427112 METRNLQ641Q3 311 aa8□□□□□ -1.13
USP40-203ENST00000427112 COMMD7Q86VX2 200 aa8□□□□□ -1.13
USP40-203ENST00000427112 FAM109AQ8N4B1 249 aa8□□□□□ -1.13
USP40-203ENST00000427112 OR5M3Q8NGP4 307 aa8□□□□□ -1.13
USP40-203ENST00000427112 TMEM239Q8WW34 195 aa8□□□□□ -1.13
USP40-203ENST00000427112 ACOT11Q8WXI4 607 aaPredicted RBP8□□□□□ -1.13
USP40-203ENST00000427112 RFKQ969G6 155 aa8□□□□□ -1.13
USP40-203ENST00000427112 TEAD3Q99594 435 aa8□□□□□ -1.13
USP40-203ENST00000427112 TCEAL2Q9H3H9 227 aaPredicted RBP8□□□□□ -1.13
USP40-203ENST00000427112 FBXL3Q9UKT7 428 aa8□□□□□ -1.13
USP40-203ENST00000427112 NUP50Q9UKX7 468 aa8□□□□□ -1.13
USP40-203ENST00000427112 ING4Q9UNL4 249 aa8□□□□□ -1.13
USP40-203ENST00000427112 EXOSC1Q9Y3B2 195 aaKnown RBP8□□□□□ -1.13
USP40-203ENST00000427112 CDH10Q9Y6N8 788 aa8□□□□□ -1.13
USP40-203ENST00000427112 ASPMQ8IZT6 3477 aa8□□□□□ -1.13
USP40-203ENST00000427112 TSPAN11A1L157 253 aa8□□□□□ -1.13
USP40-203ENST00000427112 RDH16O75452 317 aa8□□□□□ -1.13
USP40-203ENST00000427112 CELA2BP08218 269 aaPredicted RBP8□□□□□ -1.13
USP40-203ENST00000427112 PIPP12273 146 aaPredicted RBP8□□□□□ -1.13
USP40-203ENST00000427112 DCTDP32321 178 aa8□□□□□ -1.13
USP40-203ENST00000427112 DRD3P35462 400 aa8□□□□□ -1.13
USP40-203ENST00000427112 IFNGR2P38484 337 aa8□□□□□ -1.13
USP40-203ENST00000427112 REEP5Q00765 189 aa8□□□□□ -1.13
USP40-203ENST00000427112 STX4Q12846 297 aa8□□□□□ -1.13
USP40-203ENST00000427112 SNTA1Q13424 505 aa8□□□□□ -1.13
USP40-203ENST00000427112 AADACL4Q5VUY2 407 aa8□□□□□ -1.13
USP40-203ENST00000427112 OR5M10Q6IEU7 315 aa8□□□□□ -1.13
USP40-203ENST00000427112 LIN54Q6MZP7 749 aa8□□□□□ -1.13
USP40-203ENST00000427112 C11orf88Q6PI97 169 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms