RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 HCAR1Q9BXC0 346 aa11.94□□□□□ -0.5
SFSWAP-209ENST00000540469 NKX6-2Q9C056 277 aaPredicted RBP11.94□□□□□ -0.5
SFSWAP-209ENST00000540469 ING1Q9UK53 422 aaPredicted RBP11.94□□□□□ -0.5
SFSWAP-209ENST00000540469 CA5BQ9Y2D0 317 aa11.94□□□□□ -0.5
SFSWAP-209ENST00000540469 KCNE3Q9Y6H6 103 aa11.94□□□□□ -0.5
SFSWAP-209ENST00000540469 PLXND1Q9Y4D7 1925 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 NAP1L6A6NFF2 107 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 SLC22A31A6NKX4 558 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 ITGA10O75578 1167 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 MAOBP27338 520 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 ARSIQ5FYB1 569 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 FAM209BQ5JX69 171 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 MRGPREQ86SM8 312 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 ZNF689Q96CS4 500 aaPredicted RBP11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 SGPP1Q9BX95 441 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 SPG21Q9NZD8 308 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 CDC42EP2O14613 210 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 NDUFS4O43181 175 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 PLPP2O43688 288 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 PRAMEF2O60811 474 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 TAS2R38P59533 333 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 UBE2NLQ5JXB2 153 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 FCRLAQ7L513 359 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 CDK20Q8IZL9 346 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 FAM71CQ8NEG0 241 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 PXT1Q8NFP0 134 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 SNX33Q8WV41 574 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 COL26A1Q96A83 441 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 WBP1Q96G27 269 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 AMDHD1Q96NU7 426 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 PIPOXQ9P0Z9 390 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 UNC119BA6NIH7 251 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 F5H5P2 479 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 CKBP12277 381 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 DCTDP32321 178 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 GDI2P50395 445 aaKnown RBP11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 PCBP4P57723 403 aaKnown RBP11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 PM20D2Q8IYS1 436 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 OR51A7Q8NH64 312 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 SMPDL3BQ92485 455 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 DIO2Q92813 273 aa11.93□□□□□ -0.5
SFSWAP-209ENST00000540469 PPM1DO15297 605 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 PTP4A3O75365 173 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 LEFTY1O75610 366 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 IGF2P01344 180 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 GALTP07902 379 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 CLUP10909 449 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 EDNRAP25101 427 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 BSGP35613 385 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 NRG3P56975 720 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 SORDQ00796 357 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 IRF5Q13568 498 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 C4orf46Q504U0 113 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 MPP7Q5T2T1 576 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 FAM46CQ5VWP2 391 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 GDF7Q7Z4P5 450 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 TMEM17Q86X19 198 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 OR51L1Q8NGJ5 315 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 OR4C6Q8NH72 309 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 OR1S1Q8NH92 325 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 SLC22A8Q8TCC7 542 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 ADAMTS15Q8TE58 950 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 S100A16Q96FQ6 103 aaKnown RBP11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 AHCYL2Q96HN2 611 aaKnown RBP11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 NRTNQ99748 197 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 STARD7Q9NQZ5 370 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 ACSS1Q9NUB1 689 aaPredicted RBP11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 TRBV2A0A0J9YWF9 115 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 HIST1H2ABP04908 130 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 NAA10P41227 235 aaPredicted RBP11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 HCCSP53701 268 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 PRR5P85299 388 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 CCDC157Q569K6 752 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 HENMT1Q5T8I9 393 aaKnown RBP11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 HIST3H2AQ7L7L0 130 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 CDH26Q8IXH8 852 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 SPICQ8N5J4 248 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 OR5T2Q8NGG2 359 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 OR5AR1Q8NGP9 310 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 FIBINQ8TAL6 211 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 HIST1H2ACQ93077 130 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 MRPS24Q96EL2 167 aaKnown RBP11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 MS4A8Q9BY19 250 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 NPDC1Q9NQX5 325 aaPredicted RBP11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 MED9Q9NWA0 146 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 GNG8Q9UK08 70 aa11.92□□□□□ -0.5
SFSWAP-209ENST00000540469 DNASE2O00115 360 aaPredicted RBP11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 KIAA0355O15063 1070 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 GRM6O15303 877 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 SNAPC5O75971 98 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 RLN2P04090 185 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 TYRP14679 529 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 PVALBP20472 110 aaPredicted RBP11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 PSMB5P28074 263 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 BMP8BP34820 402 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 EPHB3P54753 998 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 MBOAT2Q6ZWT7 520 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 TMPRSS9Q7Z410 1059 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 BMP8AQ7Z5Y6 402 aa11.91□□□□□ -0.5
SFSWAP-209ENST00000540469 CMIPQ8IY22 773 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms