RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PTNP21246 168 aa17■□□□□ 0.31
CLN3-206ENST00000360019 MST1P26927 711 aa17■□□□□ 0.31
CLN3-206ENST00000360019 PTGDSP41222 190 aa17■□□□□ 0.31
CLN3-206ENST00000360019 SSR4P51571 173 aa17■□□□□ 0.31
CLN3-206ENST00000360019 ATP1A1-AS1Q5TC04 95 aa17■□□□□ 0.31
CLN3-206ENST00000360019 OPN5Q6U736 354 aa17■□□□□ 0.31
CLN3-206ENST00000360019 IL20RBQ6UXL0 311 aa17■□□□□ 0.31
CLN3-206ENST00000360019 USP51Q70EK9 711 aa17■□□□□ 0.31
CLN3-206ENST00000360019 LINC00471Q8N535 108 aa17■□□□□ 0.31
CLN3-206ENST00000360019 DUSP19Q8WTR2 217 aa17■□□□□ 0.31
CLN3-206ENST00000360019 IP6K3Q96PC2 410 aa17■□□□□ 0.31
CLN3-206ENST00000360019 GPA33Q99795 319 aa17■□□□□ 0.31
CLN3-206ENST00000360019 GABARAPL3Q9BY60 117 aa17■□□□□ 0.31
CLN3-206ENST00000360019 ZNF556Q9HAH1 456 aa17■□□□□ 0.31
CLN3-206ENST00000360019 POFUT2Q9Y2G5 429 aa17■□□□□ 0.31
CLN3-206ENST00000360019 CHCHD2Q9Y6H1 151 aaPredicted RBP17■□□□□ 0.31
CLN3-206ENST00000360019 DOCK10Q96BY6 2186 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 B4DXG7 233 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 GMFGO60234 142 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 RPSAP08865 295 aaKnown RBP16.99■□□□□ 0.31
CLN3-206ENST00000360019 ENDOUP21128 410 aaKnown RBP16.99■□□□□ 0.31
CLN3-206ENST00000360019 IDH2P48735 452 aaKnown RBP16.99■□□□□ 0.31
CLN3-206ENST00000360019 UGT2B15P54855 530 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 COPZ1P61923 177 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 ALG10BQ5I7T1 473 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 C1orf94Q6P1W5 598 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 KLHL17Q6TDP4 642 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 PRICKLE2Q7Z3G6 844 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 NRMQ8IXM6 262 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 ASB15Q8WXK1 588 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 THOC3Q96J01 351 aaKnown RBP16.99■□□□□ 0.31
CLN3-206ENST00000360019 DGCR6LQ9BY27 220 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 GRIP2Q9C0E4 1043 aa16.99■□□□□ 0.31
CLN3-206ENST00000360019 C2orf72A6NCS6 295 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 PIP5K1CO60331 668 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 OMPP47874 163 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 CLK3P49761 638 aaKnown RBP16.98■□□□□ 0.31
CLN3-206ENST00000360019 FOXC1Q12948 553 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 NPRL3Q12980 569 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 PDK3Q15120 406 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 ZNF468Q5VIY5 522 aaPredicted RBP16.98■□□□□ 0.31
CLN3-206ENST00000360019 ULK3Q6PHR2 472 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 MBOAT2Q6ZWT7 520 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 MEX3DQ86XN8 651 aaKnown RBP16.98■□□□□ 0.31
CLN3-206ENST00000360019 MISPQ8IVT2 679 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 PARP8Q8N3A8 854 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 RNF217Q8TC41 542 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 C3orf49Q96BT1 292 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 NXPE2Q96DL1 559 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 ZNF426Q9BUY5 554 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 KLRF1Q9NZS2 232 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 RPS6KB2Q9UBS0 482 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 HRH3Q9Y5N1 445 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 LOC100130705A0A1B0GUX0 176 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 E9PQ18 207 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 SLC16A6O15403 523 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 CDH2P19022 906 aaPredicted RBP16.98■□□□□ 0.31
CLN3-206ENST00000360019 WT1P19544 449 aaPredicted RBP16.98■□□□□ 0.31
CLN3-206ENST00000360019 SDHBP21912 280 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 MYF6P23409 242 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 CASP3P42574 277 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 SLC6A8P48029 635 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 TOMM34Q15785 309 aaPredicted RBP16.98■□□□□ 0.31
CLN3-206ENST00000360019 ACER2Q5QJU3 275 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 OR5M10Q6IEU7 315 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 TMEM156Q8N614 296 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 OR5W2Q8NH69 310 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 TMEM239Q8WW34 195 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 METTL7AQ9H8H3 244 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 REV1Q9UBZ9 1251 aa16.98■□□□□ 0.31
CLN3-206ENST00000360019 SPINK2P20155 84 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 ITPKBP27987 946 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 P2RX1P51575 399 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 C17orf67Q0P5P2 114 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 CLN3Q13286 438 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 TBC1D25Q3MII6 688 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 SWT1Q5T5J6 900 aaKnown RBP16.97■□□□□ 0.31
CLN3-206ENST00000360019 TTC23Q5W5X9 447 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 WBP2NLQ6ICG8 309 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 JMJD6Q6NYC1 403 aaPredicted RBP16.97■□□□□ 0.31
CLN3-206ENST00000360019 LINC00114Q6XXX2 140 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 RRM2BQ7LG56 351 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 ZNF555Q8NEP9 628 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 PFN4Q8NHR9 129 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 B4GALNT2Q8NHY0 566 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 PIGXQ8TBF5 258 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 DNAJA4Q8WW22 397 aaPredicted RBP16.97■□□□□ 0.31
CLN3-206ENST00000360019 FAM46AQ96IP4 442 aaKnown RBP16.97■□□□□ 0.31
CLN3-206ENST00000360019 MPP4Q96JB8 637 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 MUS81Q96NY9 551 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 UCK2Q9BZX2 261 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 PCNX3Q9H6A9 2034 aa16.97■□□□□ 0.31
CLN3-206ENST00000360019 TP53I11O14683 189 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 IFNGR2P38484 337 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 AIMP2Q13155 320 aaKnown RBP16.96■□□□□ 0.31
CLN3-206ENST00000360019 COL28A1Q2UY09 1125 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 CD300LDQ6UXZ3 194 aa16.96■□□□□ 0.31
CLN3-206ENST00000360019 Q6ZPB1 254 aaPredicted RBP16.96■□□□□ 0.31
CLN3-206ENST00000360019 DND1Q8IYX4 353 aaKnown RBP16.96■□□□□ 0.31
CLN3-206ENST00000360019 FER1L6-AS2Q96M78 137 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms